Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L15
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524           29   2.7  
01_06_1557 - 38231826-38233391                                         29   2.7  
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207...    29   3.6  
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928...    29   3.6  
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846...    28   6.2  

>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
          Length = 651

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 144 IHNHNTCQDSSPIQHFRKHTMKRRTRQLTHN 52
           +H  NTC   S  +HFR H   RR  Q  HN
Sbjct: 559 VHKKNTCTVKSCGRHFRSHKYLRR-HQSIHN 588


>01_06_1557 - 38231826-38233391
          Length = 521

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 242 CCFDGHSIFDRQLALY*SKTEYYTGTRSGQFCGQLPSYIGESEQ 373
           CC   HSIF     L+    E+Y+  RS   C   PS I E E+
Sbjct: 280 CCVRVHSIFTSIAKLFDELDEFYSWCRSATIC--RPSEIPEVER 321


>07_01_0282 -
           2070027-2070041,2074763-2075062,2075154-2075722,
           2075812-2076337
          Length = 469

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 167 YCLKDCKNALFCSNFIYS--DHYSNRCCCFDGHSIFDRQ 277
           +CL D K  L C  ++Y   D+    C CFD HS  D Q
Sbjct: 307 HCLHDPKIVL-CWRYMYGGDDYCDLGCDCFDAHSYNDLQ 344


>03_02_0828 -
           11592080-11592171,11592288-11592354,11592748-11592837,
           11592914-11592967,11593109-11593169,11593252-11593319,
           11593513-11593596,11594257-11594349,11594513-11594593,
           11594665-11594793,11595193-11595273,11595401-11595484,
           11596816-11596842,11597027-11597094,11597481-11597619
          Length = 405

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 278 IVCRKCYGHQSSSNDCCN 225
           + C  CYG + S + CCN
Sbjct: 193 VYCGSCYGSEESDDQCCN 210


>09_04_0676 -
           19383757-19383890,19384308-19384415,19384493-19384679,
           19384937-19385143
          Length = 211

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +3

Query: 279 WLYIEVKRSIIQERAADNSAGNSQAILESLNSKYYYYTRTRGLFRICYPKERPPTVEIYL 458
           W Y E    ++      N   +S+   + ++ K+ +    RG+ R C+  + P    +  
Sbjct: 59  WHYTEDGVDLVVRDPNGNQIHDSR---DKISDKFEFIVHRRGVHRFCFTNKSPYHETVDF 115

Query: 459 SPVETHCSNVDYFIPDEN 512
             + +H S  D    DE+
Sbjct: 116 DVLVSHFSYYDQHAKDEH 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,284
Number of Sequences: 37544
Number of extensions: 253773
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)