Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L15
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    40   0.001
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    31   0.45 
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   7.4  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   7.4  

>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
 Frame = +3

Query: 267 STDNWLYIEV-KRSIIQERAADNSAGNSQAILESLNSKYYYYTRTRGLFRICYPKERPPT 443
           +TDNW+ ++V +R II     +     S  +  +      Y++R  GLF +C+P   P  
Sbjct: 43  TTDNWVEVQVNRREIINSFKREPEL--SLRLQNAFGHNNIYFSRNYGLFNLCFPDTVPQD 100

Query: 444 VEIYLSPVETHC--SNVDYFIPDENNETKGLSDDAMNRLHMARSTV 575
           V  + S + + C  SN ++ +P+   E    S++ + R + A++T+
Sbjct: 101 VGSF-SKMGSPCIWSN-EFMVPESKKE--HFSNNELYRHYAAKATI 142


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 143 IYPFCS-IFYCLKDCKNALFCSNFIYSDHYSNRCCCFDGHSIFDRQLAL 286
           IY F S I + L  CK +     +++  H SN+C  F  ++IF + +++
Sbjct: 129 IYAFASVIIFLLSGCKYSWSTEMWMFLYHVSNQCVSFSFYAIFCKYISI 177


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
 Frame = -1

Query: 347 GVARRIVRCAFLYNTPFYFNIKPIVCRKCYGHQSSSNDC--------CNGRYR*SYCRTR 192
           GV   ++RC         F      C  C G + SS+ C        C+GR+  + CR +
Sbjct: 625 GVGHTLLRCPLASFEVRRFIANDNRCAVCAGERHSSSMCYSTLKCTYCSGRHHPAGCRLK 684

Query: 191 HFY 183
            FY
Sbjct: 685 EFY 687


>Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical
           protein F14H3.9 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 264 FSTDNWLYIEVKRSIIQERAADNSAGNSQAILESLNSKYYYYTR 395
           F+ + W Y  V R    E A  N   +S+  + +LNS   Y+ +
Sbjct: 153 FTIEKWCYKWVMRKHCGESAVANFRKHSEMFVNALNSSISYFNK 196


>U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical
           protein F46F11.10 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 435 PPTVEIYLSPVETHCSNVDYFIPDENNETKGLSDD 539
           P   E  L   E H  NV Y  PD   E + + DD
Sbjct: 237 PIVTENGLETYENHSKNVIYLSPDATEELESVDDD 271


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 155  CSIFYCLKDCKNALFCSNFIYSDHYSNRCCCFDGHS 262
            C   Y  + C  +  C+N    DH S RC C  G++
Sbjct: 1244 CLKGYFGRHCSQSCRCANSKSCDHISGRCQCPKGYA 1279


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 155  CSIFYCLKDCKNALFCSNFIYSDHYSNRCCCFDGHS 262
            C   Y  + C  +  C+N    DH S RC C  G++
Sbjct: 1244 CLKGYFGRHCSQSCRCANSKSCDHISGRCQCPKGYA 1279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,390
Number of Sequences: 27780
Number of extensions: 249164
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)