Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L14
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    29   0.33 
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    29   0.44 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   5.4  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   7.2  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.2  

>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 314 FFLQITMNKHLFSFNTKIYEFISNRDQLIRLISDFGN 424
           F  Q+  + +LF F  K+  F+SN D   R+ +D+ N
Sbjct: 25  FVEQLKQHVNLFEFAPKLVGFLSNSDPAARMYADWTN 61


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +2

Query: 293 DNIEYYDFFLQITMNKHLFSFNTKIYEFISNRDQL------IRLISDFGNNYIRCCRDAS 454
           D+I  +   L   ++K+   +N        ++D L      ++++S   N Y RC  D S
Sbjct: 411 DDIVCFQGSLWTQIDKNALDYNDSADNIDEHKDDLKELPRRLQMVSKLSNTYFRCLHDKS 470

Query: 455 PRYASP 472
             Y  P
Sbjct: 471 VEYVCP 476


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 203 TPGRCETSTLFCKSNTQK 256
           +PG CETS+ F K+  +K
Sbjct: 852 SPGSCETSSAFAKTYAEK 869


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 333 IVICKKKS*YSMLSLRHI*FLSQSVPFCVLLLQNNVDV 220
           +V+CK  + Y  L+L +  + + +   C+LL  N+  V
Sbjct: 27  VVVCKSVNPYFNLALENYLYENSTAKHCLLLYTNSPSV 64


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 135 FELCSKVTTFTTANGTLTILTPGNPVKYNLLNCYKVSGNLFIP 7
           + L S   +FTT++ + T   P   +   L N    S +L++P
Sbjct: 105 YNLLSNTPSFTTSHSSSTTFVPPATMGGGLNNLSSPSSSLYLP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,550
Number of Sequences: 5004
Number of extensions: 40470
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)