Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L14
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    28   4.9  
AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    28   4.9  
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    28   4.9  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   6.5  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   6.5  

>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -2

Query: 283 YLVPITICSFLRITFTE*CRCFTSARRPGTAHVXXXXFLHFCGVLINTLLRTLFKSYHIY 104
           +L+P+ + SFL ++F   C CF   R                 ++ N LL  +  SY + 
Sbjct: 103 FLLPVILISFLLMSFNRFCACFFPLRYQNLFSSSMIRTF----IVFNWLLSLVAGSYLVV 158

Query: 103 YRE 95
            RE
Sbjct: 159 VRE 161


>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +2

Query: 317 FLQITMNKHLFSFNTKIYEFISNRDQLIRLISDFGNNYIRCCRDASPRYASP 472
           +L + +  HL +FN KI+  ++    ++         Y+ C ++A+    +P
Sbjct: 226 WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTTP 277


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +2

Query: 317 FLQITMNKHLFSFNTKIYEFISNRDQLIRLISDFGNNYIRCCRDASPRYASP 472
           +L + +  HL +FN KI+  ++    ++         Y+ C ++A+    +P
Sbjct: 226 WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTTP 277


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 PGR-CETSTLFCKSNTQKGTDCDRN*IC 286
           PGR C+ +T  C +    G DCD N  C
Sbjct: 115 PGRQCQKTTNECGAKQTYGVDCDENAAC 142


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 PGR-CETSTLFCKSNTQKGTDCDRN*IC 286
           PGR C+ +T  C +    G DCD N  C
Sbjct: 115 PGRQCQKTTNECGAKQTYGVDCDENAAC 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,451,558
Number of Sequences: 27780
Number of extensions: 226801
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)