Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L13
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 31 0.10
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 29 0.41
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 29 0.41
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 29 0.54
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 27 2.9
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 26 3.8
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 26 5.1
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 25 6.7
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 8.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 8.8
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 8.8
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 31.5 bits (68), Expect = 0.10
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 91 NLVEYLIANELVSSVRVVDKTPPQLAFLNPKHSKIFED--SRVEYKSANLINPTSCASAL 264
NLV + +A E VS VR++D QL+ K S + + ++ ++ ++P CA A+
Sbjct: 331 NLVVHTLAKEKVSFVRIIDLIFVQLSTWPTKRSFSMSEIVTSMQMSISSSLSPDQCAKAI 390
Query: 265 DPGDGAL--WGLVVNCAGETRV 324
+ AL W +N G +V
Sbjct: 391 ELLSKALPAW-CTINLLGNIQV 411
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.41
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 21/206 (10%)
Frame = +1
Query: 31 TGDNS--KPRVIVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQLAFLNPKHSKIFED 204
TGD K ++ GG GFIG N ++Y + +DK + SK+
Sbjct: 2 TGDYKEYKGYALITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQ 61
Query: 205 SRVEYKSANLINPTSCASALDPGDGALWGL--VVNCAGETRVGQT--EAVYSEGIFTLSS 372
+ +L D + + ++N A E+ V ++ + +Y LS+
Sbjct: 62 PNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILST 121
Query: 373 NVAKQCVKLKVPR---------LVEISSGQMYNSDKPH---KEDGPVEPWTMEARMKSKV 516
+CV++ + + V +S+ ++Y + E + P + A K+ V
Sbjct: 122 QNLLECVRILLGKKEELRNRLNFVHVSTDEVYGEQDENASVDEKSKLNPTSPYAASKAAV 181
Query: 517 E---QEFKTMDAELNYTIIRPAIVYG 585
+ Q ++ +++ T+IR VYG
Sbjct: 182 DLIIQSYR-YSYKISVTVIRANNVYG 206
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 52 RVIVLGGCGFIGRNLVEYLIAN--ELVSSVR 138
+++VLGG GF+G N+ + IA E+VS R
Sbjct: 2 KIVVLGGSGFLGHNICKLAIAKGYEVVSVSR 32
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.54
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 KPRVIVLGGCGFIGRNL-VEYLIANELVSSVRVVDKTPPQLAFLNPKHSKI 195
K R++V GC F+G L ++ I N LV +VVD L FL+ + K+
Sbjct: 980 KLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTV--DLFFLSSRQRKL 1028
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 133 VRVVDKTPPQLAFLNPKHSKIFED 204
+ + KTPP L FL+ +FED
Sbjct: 183 LEICQKTPPNLDFLDRSGDSVFED 206
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 3.8
Identities = 23/114 (20%), Positives = 47/114 (41%)
Frame = +1
Query: 121 LVSSVRVVDKTPPQLAFLNPKHSKIFEDSRVEYKSANLINPTSCASALDPGDGALWGLVV 300
LV R++D F N + + SRV + L+N + + + DGA ++
Sbjct: 46 LVLGDRIIDTRSEWRTFSNSDEAS-GDPSRVGKVANPLLNGSQLDTTISSYDGA-GAMLA 103
Query: 301 NCAGETRVGQTEAVYSEGIFTLSSNVAKQCVKLKVPRLVEISSGQMYNSDKPHK 462
G + + E + + T + C + +P+++ ++ Q+Y HK
Sbjct: 104 KAQGRSVQVRGE----KNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHK 153
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 43 SKPRVIVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQ 162
+KPR IV+ G G IG L L ++V+ K P+
Sbjct: 5 NKPRDIVIVGAGVIGLTTAWILSDLGLAPRIKVIAKYTPE 44
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 277 GALWGLVVNCAGETRVGQTEAVYSEGIFTLSSNVAKQ 387
G +WG E V ++ A S+ +FT+ ++ Q
Sbjct: 344 GCIWGFNGKPLSEVSVSRSHAPVSDSLFTIGLDILSQ 380
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 157 PQLAFLNPKHSKI--FEDSRVEYKSANL 234
P +FLNPKH KI F ++ + Y N+
Sbjct: 226 PLTSFLNPKHQKISRFRNTDLLYVEFNI 253
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 191 RYSKTPALNTRVRTLSIRRHAPQHWT 268
RY + +L+ +++ SI RH HWT
Sbjct: 309 RYFVSGSLDCKIQLWSILRHKILHWT 334
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 442 NSDKPHKEDGPVEPWTMEARMKSKVEQEFKTMDAELNYTIIRPAIVYGVGDRRSLT 609
N D P ++ + + +K K+E ++ A++N + R A DR+ LT
Sbjct: 421 NPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLT 476
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 426 RYFH*AWYFQLDALLCDVRAQRED 355
R H WY +D+ + D R +RED
Sbjct: 48 RCSHCGWYEPVDSAMIDQRRRRED 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,102
Number of Sequences: 5004
Number of extensions: 49035
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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