Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L13
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 38 0.006
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 37 0.013
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 37 0.013
AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical ... 30 1.2
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 29 2.7
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 29 2.7
AL110500-3|CAB54483.1| 493|Caenorhabditis elegans Hypothetical ... 29 3.5
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 28 6.2
U39667-7|AAP31442.1| 324|Caenorhabditis elegans Disorganized mu... 27 8.2
U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized mu... 27 8.2
AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L) prot... 27 8.2
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 27 8.2
AF500489-1|AAM21705.1| 324|Caenorhabditis elegans DIM-1 short p... 27 8.2
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 37.9 bits (84), Expect = 0.006
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Frame = +1
Query: 55 VIVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQLAF-LNPKH--SKIFEDSRVEYKS 225
V++ GGCGFIG N + + + DK LAF +P H +I E R ++
Sbjct: 11 VLITGGCGFIGSNYINFTFNKWKNTKFINYDK----LAFGASPLHVEKEIRESPRYKFVE 66
Query: 226 ANLINPTSCASALDPGDGALWGLVVNCAGETRVGQTEAVYSEGIFTLSSNVAKQCVKLK- 402
A L + + L + +V++ A T V ++ YS+ I T+ N+ L+
Sbjct: 67 AALEDQPTLIKTLQENE---VDMVIHFAAITHVDES---YSDRIGTIQDNIISTTTLLES 120
Query: 403 --------VPRLVEISSGQMYNSD----KPHKEDGPV-EPWTMEARMKSKVEQEFKTM-- 537
V +LV IS+ ++Y P E + P A K+ E ++
Sbjct: 121 IVNSPYKGVKKLVHISTDEVYGDSFEDTTPKSESASLPNPTNPYAASKAACEMVIRSYWH 180
Query: 538 DAELNYTIIRPAIVYG 585
+L Y ++R VYG
Sbjct: 181 SYKLPYVMVRMNNVYG 196
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 36.7 bits (81), Expect = 0.013
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 2/144 (1%)
Frame = +1
Query: 55 VIVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQLAFLNPKHSKIFEDSRVEYKSANL 234
V++ GGCGFIG N V Y+ + +DK N S + R + ++
Sbjct: 8 VVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAES-VRNSPRYKLVLTDI 66
Query: 235 INPTSCASALDPGD-GALWGLVVNCAGETRVGQTEAVYSEGIFTLSSNVAKQCVKLKVPR 411
N + + + + + +C +T + + + K+ R
Sbjct: 67 KNEAAILNVFEQNEIDTVIHFAADCTSTRCYNETAEAVQNNVLSFIQFLETVRTYGKIKR 126
Query: 412 LVEISSGQMY-NSDKPHKEDGPVE 480
V IS+ ++Y +SD E G VE
Sbjct: 127 FVHISTDEVYGDSDLSENEQGKVE 150
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 36.7 bits (81), Expect = 0.013
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 55 VIVLGGCGFIGRNLVEYLIANELVSSVRVVDK 150
V V GG G +GR +V+ L+ NE ++ +R++D+
Sbjct: 4 VAVTGGAGLVGRYVVQRLLENEQIAEIRIIDR 35
>AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical
protein Y53G8AL.2 protein.
Length = 431
Score = 30.3 bits (65), Expect = 1.2
Identities = 41/177 (23%), Positives = 79/177 (44%)
Frame = +1
Query: 55 VIVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQLAFLNPKHSKIFEDSRVEYKSANL 234
V V G GF+G +V N S + + + P + +H + E +V Y L
Sbjct: 62 VTVFGASGFLGLPVVNKFAKNG--SQIIIPYRQDP---YYMREHKVLGELGQVLYFPFEL 116
Query: 235 INPTSCASALDPGDGALWGLVVNCAGETRVGQTEAVYSEGIFTLSSNVAKQCVKLKVPRL 414
++ S A+ + +V+N G TRV + Y + T + +A+ C ++ V +
Sbjct: 117 MDEESIRKAVKYSN-----VVINLIG-TRVPTGKYNYYDVNDTGARRLARICKEMGVEKF 170
Query: 415 VEISSGQMYNSDKPHKEDGPVEPWTMEARMKSKVEQEFKTMDAELNYTIIRPAIVYG 585
V +S+ + + +P K + + ++ +V + +A TIIRP+++YG
Sbjct: 171 VHLSA--LGATTQPQKGHFVAKSQFLHSKGLGEVAVREEFPEA----TIIRPSVIYG 221
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.5
Identities = 29/124 (23%), Positives = 54/124 (43%)
Frame = +1
Query: 58 IVLGGCGFIGRNLVEYLIANELVSSVRVVDKTPPQLAFLNPKHSKIFEDSRVEYKSANLI 237
+++GG GF+G +++ L + VVD P + K KI + S + Y A+ +
Sbjct: 5 VIVGGGGFLGAHVISALQKIGCKERIIVVDPCPQEF-----KTIKI-DKSNISYIKASFL 58
Query: 238 NPTSCASALDPGDGALWGLVVNCAGETRVGQTEAVYSEGIFTLSSNVAKQCVKLKVPRLV 417
+ + L+ + V G G ++V++ + + + KQC L V R +
Sbjct: 59 DDKVLENILNGASAVVHLAAVGHTG-LIAGDRKSVHNFNV-NGTKQLIKQCKALGVKRFL 116
Query: 418 EISS 429
SS
Sbjct: 117 YASS 120
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 37 DNSKPRVIVLGGCGFIGRNLVEYLI 111
+ ++ R+++ GG GF+G +LV+ L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 37 DNSKPRVIVLGGCGFIGRNLVEYLI 111
+ ++ R+++ GG GF+G +LV+ L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157
>AL110500-3|CAB54483.1| 493|Caenorhabditis elegans Hypothetical
protein Y87G2A.3 protein.
Length = 493
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 111 CE*ASE-QRPCRRQNATATGISEPETFEDIRRLPR*IQECEPYQSDVMRLSI 263
CE E + C T S+P FE ++R P+ + + EPY M++ +
Sbjct: 402 CETRDEFENLCETLQKTTLPASQPPMFEFLQRRPKYLPKFEPYTGVSMKIEM 453
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 105 FDCE*ASEQRPCRRQNATATGIS 173
FDC+ +++ C + NAT T IS
Sbjct: 172 FDCDGGDDEKNCTKSNATTTTIS 194
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 105 FDCE*ASEQRPCRRQNATATGIS 173
FDC+ +++ C + NAT T IS
Sbjct: 172 FDCDGGDDEKNCTKSNATTTTIS 194
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 612 WCKTSSITDAIHNGRPYDRIIE----FCVHGLKLLFYFTLHSGFH 490
+C S+ DA+HN R Y R E F V+ L LF+ + F+
Sbjct: 167 YCWVSTRCDAVHNNRHYCRNEEYENQFFVYNLVFLFFTFITGAFY 211
>U39667-7|AAP31442.1| 324|Caenorhabditis elegans Disorganized
muscle protein 1,isoform b protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 157 PQLAFLNPKHSKIFEDSRVEYKS 225
PQ+ +++PK K+ E SR+++K+
Sbjct: 245 PQVTWISPKSKKMKESSRIKFKT 267
>U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized
muscle protein 1,isoform a protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 157 PQLAFLNPKHSKIFEDSRVEYKS 225
PQ+ +++PK K+ E SR+++K+
Sbjct: 561 PQVTWISPKSKKMKESSRIKFKT 583
>AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L)
protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 157 PQLAFLNPKHSKIFEDSRVEYKS 225
PQ+ +++PK K+ E SR+++K+
Sbjct: 561 PQVTWISPKSKKMKESSRIKFKT 583
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 421 ISSGQMYNSDKPHKEDGPVEPWTMEARMKSKVEQEFKTMDAE 546
IS+G N+D+ E +E W + K K Q F +D E
Sbjct: 149 ISAGSPLNNDRNVFEGRQLENWAIPHHNKLKYSQLFNALDKE 190
>AF500489-1|AAM21705.1| 324|Caenorhabditis elegans DIM-1 short
protein isoform protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 157 PQLAFLNPKHSKIFEDSRVEYKS 225
PQ+ +++PK K+ E SR+++K+
Sbjct: 245 PQVTWISPKSKKMKESSRIKFKT 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.134 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,586
Number of Sequences: 27780
Number of extensions: 285148
Number of successful extensions: 845
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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