Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L12
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 113 2e-26
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 27 2.4
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.4
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.2
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 4.2
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.4
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 9.8
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.8
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 9.8
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 113 bits (271), Expect = 2e-26
Identities = 50/82 (60%), Positives = 62/82 (75%)
Frame = +2
Query: 11 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIY 190
RRC+VQ++YAIGVAEPLSI V YGTS KT +L+ I++KNFDLRPG +VK L L+ P Y
Sbjct: 299 RRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQTPFY 358
Query: 191 QKTSTYGHFGREGFPWESPKPL 256
T++YGHF + PWE PK L
Sbjct: 359 LSTASYGHFTDQSKPWEQPKEL 380
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 153 LPGRRSKFFFTMERSCCC 100
LP R+ FFT+ CCC
Sbjct: 280 LPDERATMFFTIYELCCC 297
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +3
Query: 225 KGSRGRAPSPSL*NDFRPEALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVS 404
K G+ P+ L ++ + L + + +Y+V + + L + ++SL +MFVS
Sbjct: 226 KNMCGKNPTSELPTNYSDKTLTLWENELSSMRKVYFVKYKTEYEFLQKRYLSLARIMFVS 285
Query: 405 RE 410
++
Sbjct: 286 KK 287
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 45 ELQSHSQLPYSTTALRTKHNN-SFSP 119
+L +HS+LP T++ +KH + +FSP
Sbjct: 277 DLPTHSRLPSRTSSFSSKHRSVTFSP 302
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 390 IHLKRQTPATIWRPSYNDTRSR 325
+H++ QTP +WR Y+ S+
Sbjct: 220 LHVEHQTPENLWRLPYSSFHSK 241
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 89 SHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTY 208
S + + L+ + K + P + LRA +Y+K+ Y
Sbjct: 18 SKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQY 57
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 297 YTSIYYKL-LIYYVCHCRKDAKLSRAFVSLDELMFVS 404
+TS Y L L+YY+C R+ + V++DE V+
Sbjct: 141 FTSFRYALFLVYYICRSRRLSPTD--LVAIDEYFLVN 175
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 163 RIEPTSADISKNKYLRTLWPGRVPVGEPQAPHCRMTSD 276
RIE SA + + Y+ WPG +G P TSD
Sbjct: 325 RIE-VSASLGGSPYIPGFWPGIWTIGNLVRPGYLATSD 361
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -1
Query: 553 APNNEPFLKIYRAKLSEHVIIIILNPVN 470
A N PFL+I+RAK + ++ +++P++
Sbjct: 476 AVENSPFLEIFRAKKFD--VLFMVDPID 501
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 327 YYVCHCRKDAKLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTVALT 476
+Y H KLSR F S + + + + TA P PQV L+
Sbjct: 23 FYHQHYEHTGKLSRTFFSPTHIKYNRLSTLDTSTSTANAAPDPQVLTFLS 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,302
Number of Sequences: 5004
Number of extensions: 53072
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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