Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L12
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 432 TAVRKPLPQVTVALTGFSI 488
           +A   P PQVT AL GF++
Sbjct: 444 SAAGNPTPQVTWALDGFAL 462


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 432 TAVRKPLPQVTVALTGFSI 488
           +A   P PQVT AL GF++
Sbjct: 444 SAAGNPTPQVTWALDGFAL 462


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 288 CKYYTSIYYKLLIY--YVCHCRKDAKLSRAFVSLDELM--FVSREPREWN 425
           C    S+++K  I   +   C+K  ++ +   +LD+L   F + EP +WN
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQKQ--NLDKLAEWFTTNEPEKWN 102


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 288 CKYYTSIYYKLLIY--YVCHCRKDAKLSRAFVSLDELM--FVSREPREWN 425
           C    S+++K  I   +   C+K  ++ +   +LD+L   F + EP +WN
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQKQ--NLDKLAEWFTTNEPEKWN 102


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 370 LPGSSIWSCLFFFMLILIG 388


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 423 LPGSSIWSCLFFFMLILIG 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,635
Number of Sequences: 438
Number of extensions: 4536
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)