Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L09
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 70 3e-13
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.42
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 1.7
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 27 2.3
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 27 2.3
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 27 2.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.0
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 3.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 6.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 9.1
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 69.7 bits (163), Expect = 3e-13
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 18/133 (13%)
Frame = +3
Query: 108 HQYINALTIFTLETRETMVKMLPEVLLDLSKISDTQAIASPMLEFLSTLTRVPRVFASFV 287
H I++L + E ++ K LP +L+ LS++ ++ +LEFL +L R+P + A+F
Sbjct: 806 HVSIHSLMLCCYELPVSIRKQLPAILVTLSRLITKPDLSVHILEFLCSLARLPDLIANFT 865
Query: 288 EDQYMSVFAILLPY------TNPSR------------YNHYVVSLAHHVIAAWFLKCRLV 413
+ Y +FAI L Y T S+ Y+ YV++LA+ V+ WFL RL
Sbjct: 866 DADYRQIFAIALKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSVLQIWFLSLRLT 925
Query: 414 YRRNFVRFIIHGL 452
R+ FV +I+ GL
Sbjct: 926 ERKKFVPWILRGL 938
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 29.5 bits (63), Expect = 0.42
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +3
Query: 57 QRIVRCLLKYGMVLRTPHQYINALTIFTLETRETMVKMLPEV---LLDLSKISDTQAIAS 227
Q ++ CL + +R + LE + M +P + LL L+ D A++S
Sbjct: 508 QAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLANEVDIDALSS 567
Query: 228 PMLEFLSTLTRVPRVFASFVEDQYMSVFAILLPYT 332
M EF+S+ + FAS + Q + F L+ T
Sbjct: 568 CMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQET 602
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 351 HYVVSLAHHVIAAWFLKCRLVYRRNFVRFIIHGLHNYIIMPFEEQLQYKTNHFHQ 515
HY L HH + + + +L RF+ L II F L Y TNH ++
Sbjct: 1785 HYY--LGHHRVLMYEEEQKLPVNEQSERFLSGELVTRIINEFGRSLYYGTNHIYE 1837
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 153 ETMVKMLPEVLLDLSKISDTQAIASPMLEFLSTLTRVPRVFASFVEDQYMS 305
E +++LP ++ S I +T + + ++L R+PR S Y S
Sbjct: 419 EASLRILPRRMIAESSILETWSRSGNQTDYLGAFQRIPRHLRSIYPHAYQS 469
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 575 RSRTQARASLSVRGVLVGVALVEVISFVLELLLEGHYDVVVQTVY 441
+S AR + R + VG +V V SFV+ L + H D + + Y
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPY 164
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 575 RSRTQARASLSVRGVLVGVALVEVISFVLELLLEGHYDVVVQTVY 441
+S AR + R + VG +V V SFV+ L + H D + + Y
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPY 164
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.0
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +3
Query: 30 HTYLEPQTQQRIVRCLLKYGMVLRTPHQYINALTIFTLETRETMVKMLPEVLLD------ 191
H + +PQ Q + + + L +PH+ I ++ I L + + LP+ LL
Sbjct: 1387 HKFDQPQHAQTRTKIIAIFFKDLYSPHKEIYSVAIDALRHVLSQNQKLPKELLQSGLRPI 1446
Query: 192 LSKISDTQAIASPMLEFLSTLTRV 263
L +SD ++ LE LS L R+
Sbjct: 1447 LMNLSDHNKLSVNGLEGLSRLLRL 1470
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 9 EAALAPYHTYLEPQTQQRIVRCLLKYGM 92
EA LA Y L+P R+ +CL+ Y +
Sbjct: 298 EAELARYLGILKPNAVGRLTKCLVSYNL 325
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 171 LPEVLLDLSKISDTQAIASPMLEFLSTLTR 260
LP+ + +K+ D++ +P +EFLST ++
Sbjct: 765 LPQPISTWNKLLDSECHRNPNMEFLSTFSK 794
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 212 AGHRQPDARVPLNADAGAEGVRVL---RGGPVHVGVRDPAPLHEPLAVQPLRG 361
+ HR PD V A + G+RV+ GG H+ A P+ P++G
Sbjct: 421 SAHRTPDRMVTYARTAASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKG 473
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 320 APLHEPLAVQPLRGVARPPRHRRLVPQVPP 409
APL +P++ P +AR P +L + PP
Sbjct: 994 APLSKPVSTSPAAPLARVPPVPKLSSKAPP 1023
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 9.1
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 225 SPMLEFLSTLTRVPRVFASFVEDQYMSVFAILLPYTNPSRYNHYVVSLAHHVIAAWFLKC 404
SP+L F +TL + RVF F +Y N +Y + LA ++ W +
Sbjct: 465 SPLLGFFTTLPGILRVFQCF--RRYSDSLKSFPHLVNALKYIFNI--LAQMFLSLWRIHP 520
Query: 405 RLVYRRNFVRFI-IHGLHNY 461
L YR + F ++ L +Y
Sbjct: 521 GLKYRVLYTIFAGVNSLFSY 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,432
Number of Sequences: 5004
Number of extensions: 33136
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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