Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L09
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 32 0.33
05_02_0156 + 7163756-7163834,7165447-7166225 31 1.0
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 29 2.3
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702... 29 2.3
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 29 2.3
09_04_0109 - 14674980-14675004,14675861-14676468 29 3.1
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 29 3.1
10_08_0797 + 20646091-20646519,20646531-20647460 29 4.1
03_06_0069 - 31449319-31450368 29 4.1
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 29 4.1
05_04_0292 + 19893895-19894983 28 5.4
04_04_0155 - 23153314-23154204,23156887-23157104,23157284-231573... 28 5.4
03_06_0199 + 32310272-32311432 28 5.4
11_04_0445 + 17818190-17818874,17819730-17819749 28 7.1
07_03_0998 - 23214548-23214567,23215424-23216120 28 7.1
07_01_1118 - 10316298-10316710,10316789-10317264,10317397-103177... 28 7.1
06_03_0895 - 25739515-25740498 28 7.1
05_03_0372 + 13181649-13182321,13183149-13183213 28 7.1
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 27 9.4
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 27 9.4
06_03_0335 + 19662933-19663334,19663358-19664023 27 9.4
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 27 9.4
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +2
Query: 230 DARVPLNADAGAEGVRVLRGGPVHVGVRDPAPLHEP-LAVQPLRGVARPPRHRR---LVP 397
D + P A +E + P D P H P A++ LRG A PP RR L P
Sbjct: 38 DQQPPHPPKASSEALPCAASPPARCRGGDHQPPHPPEAALEALRGAASPPARRRGGDLHP 97
Query: 398 QVPPRLQEE 424
PP E
Sbjct: 98 SHPPEAASE 106
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 221 RQPDARVPLNADAGAEGVRVLRGGPVHVGVRDPAPLHEPLAV-QPLRGVARPPRHRR 388
R D + P +A E +R P D P H P A + LRG A PP RR
Sbjct: 63 RGGDHQPPHPPEAALEALRGAASPPARRRGGDLHPSHPPEAASEALRGAASPPERRR 119
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 209 HAGHRQPDARVPLNADAGAEGVRVL-RGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHR 385
H QP ++ + G G RVL R GP+ G++ APLH + R A PPR R
Sbjct: 56 HPRPHQPGELSGVSFEGGHGGQRVLPREGPLP-GLQADAPLHP----RHRRRRAAPPRPR 110
Query: 386 RLVP 397
RL P
Sbjct: 111 RLRP 114
>05_07_0364 - 29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 29.5 bits (63), Expect = 2.3
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Frame = +3
Query: 114 YINALTIFTLETRETMVKMLPEVLLDLSKISDTQAIASPMLEFL--STLTRVPRVFASFV 287
Y+ IF + ++ +++ L LD+ + ++T A + PML L ST R R F ++V
Sbjct: 878 YVVDPQIFDISPKQPLLRSLCCGPLDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVAYV 937
Query: 288 EDQYMSVFAILLPY-----TNPSRYNHYVVSLAHHVIAAWFLKCRLVY---RRN---FVR 434
D + + P PS + + A A+W + C L Y RRN FV
Sbjct: 938 VDPQILDVSPKQPLLRGLCCGPSDIRRFAETTA----ASWPMLCTLRYSTFRRNNRCFVS 993
Query: 435 FII 443
+++
Sbjct: 994 YVV 996
>05_07_0250 +
28669593-28669660,28669759-28669817,28670144-28670248,
28670983-28671019,28671446-28671542,28671700-28671781,
28671870-28671939,28672049-28672212,28672897-28672940,
28673021-28673176,28673273-28673494,28673736-28673883,
28673947-28674034,28675032-28675159,28675259-28675323,
28675380-28675426,28675427-28675539,28676003-28676019
Length = 569
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 389 LVPQVPPRLQE--ELRPVHHTRSAQLHHNALRGAAPVQN 499
LVP PPR ++ + + HH S+ LH A +G A V+N
Sbjct: 197 LVPS-PPRQEDSPQQQENHHAASSPLHEEAQQGGASVKN 234
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 317 PAPLHEPLAVQPLRGVARPPR-HRRLVPQVPPRLQ 418
P+P+ P+A QP R + PPR ++V QVP +Q
Sbjct: 94 PSPVVRPMAPQPPRQMYVPPRPQTQIVRQVPRTVQ 128
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +2
Query: 308 VRDPAPLHEPLAVQPL--RGVARPPRHRRLVPQVPPRLQEELRP------VHHTRSAQLH 463
+R P + A++P+ V+ PPRHR L+P P R P H RS
Sbjct: 28 LRPPPKVAASFALRPMVAAAVSPPPRHRLLLPPPPGRCLLHPPPTVAASFTHRPRSPPCL 87
Query: 464 HNALRGAAP 490
N+ G+ P
Sbjct: 88 QNSKSGSPP 96
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 308 VRDPAPLHEPLAVQPLRGVAR---PPRHRRLVPQVPPRLQEELRPV-HHTRSAQLHHNAL 475
+R AP + PL A PPR R P+ PPR +++ P+ +H A L +A
Sbjct: 1 MRTTAPSSKAATFLPLSASAPTSPPPRRRLRPPRSPPRRVDDVDPLPNHRDDASLSSSAA 60
Query: 476 RG 481
G
Sbjct: 61 GG 62
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = +2
Query: 245 LNADAGAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPPRLQEE 424
LNA G RV+ G H PAP P P + AR RHR+ +VPP +
Sbjct: 98 LNAVRATAGSRVVHLGYEHSAAPAPAPAPAP---APAKTTAR--RHRKNF-RVPPGARRR 151
Query: 425 LRP 433
L P
Sbjct: 152 LAP 154
>03_06_0069 - 31449319-31450368
Length = 349
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 281 LRGGPVHVGVRDPAPLHEPLAVQPLRGVARPP 376
LR P+ G R P P+ P+A P+ A PP
Sbjct: 109 LRNVPIGGGCRKPRPMPAPVAKPPMSCKAAPP 140
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 194 LQDIGHAGHRQPDARVPLNADAGAEGVRVLRGGPVHVG 307
L + G A +P+A VPL+ G + V VL G P+ +G
Sbjct: 541 LDEAGQAS--EPEAMVPLSGLCGRDTVVVLAGDPMQLG 576
>05_04_0292 + 19893895-19894983
Length = 362
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 227 PDARVPLNADAGAEGVRVLRGGPVHVGVRDPAPLHEPLA 343
P+ R+P + D G +G+R LR + + D A L +P A
Sbjct: 142 PERRLPAHIDTGVDGLRRLRS----IALSDAAALGDPAA 176
>04_04_0155 -
23153314-23154204,23156887-23157104,23157284-23157392,
23157507-23157509
Length = 406
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 9 EAALAPYHTYLEPQTQQRIVRCLLKYGMV------LRTPHQYINALTIFTLETRETMVKM 170
+A L Y T T I RCL K +V P Q + ALT+ +E + +VK+
Sbjct: 92 DAVLGRYLTVAVSATIAAIRRCLDKAAIVEADLAAATPPEQPVAALTVTEVEEAKMVVKL 151
Query: 171 LP 176
LP
Sbjct: 152 LP 153
>03_06_0199 + 32310272-32311432
Length = 386
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 404 PPRLQEELRPVHHTRSAQLHHNALRGAAPVQ 496
PP +PVH R A+ H+ALRGAA ++
Sbjct: 86 PPARGARPQPVHRRREAR-RHDALRGAAALR 115
>11_04_0445 + 17818190-17818874,17819730-17819749
Length = 234
Score = 27.9 bits (59), Expect = 7.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 225 WRWPACPISWRGR 187
W W CP++W+G+
Sbjct: 213 WEWQNCPVAWKGQ 225
>07_03_0998 - 23214548-23214567,23215424-23216120
Length = 238
Score = 27.9 bits (59), Expect = 7.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 225 WRWPACPISWRGR 187
W W CP++W+G+
Sbjct: 217 WEWQNCPVAWKGQ 229
>07_01_1118 -
10316298-10316710,10316789-10317264,10317397-10317735,
10317798-10317895,10319007-10319045
Length = 454
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 39 LEPQTQQRIVRCLLKYGMVLRTPHQYINALTIFTLETRETMVKMLPEVLLDLSKI 203
L+ ++ ++R L + P Q ++TL ET++ +PE L+DL K+
Sbjct: 301 LDKLSEFTLLRVLDLQDYITELPSQINKLHHLYTLWLYETLLNKVPESLVDLEKL 355
>06_03_0895 - 25739515-25740498
Length = 327
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 338 LAVQPLRGVARPPRHRRLV----PQVPPRLQEELRPVHHTRSAQL-HHNALRGAA 487
L + P+ + R RHRRL P P + +HH + +L HH+ LR A
Sbjct: 14 LIILPMANLIRSARHRRLAGARRPPPGPWALPVIGHLHHLLAGKLPHHHKLRDLA 68
>05_03_0372 + 13181649-13182321,13183149-13183213
Length = 245
Score = 27.9 bits (59), Expect = 7.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 225 WRWPACPISWRG 190
W W CP++W+G
Sbjct: 209 WHWDKCPVAWKG 220
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 215 GHRQPDARVPLNADAGAEGVRVLRGGPVH--VGVRDPAPLHEPLAVQPLRGVARPPRHR 385
G ARVP A R L G V VGV P PL PL + P R PP R
Sbjct: 32 GRAAAAARVPPPESPDAGARRELLGIDVEHIVGVALPLPLPPPLPLNP-RATPAPPSAR 89
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 515 LVEVISFVLELLLEGHYDVVVQTVYDEPDEVPPVDEAALEEP 390
+++V+ +L + + + Y P VPP A EEP
Sbjct: 146 VLQVLKVLLNAVASNRFREIAVVFYKNPVSVPPASSAMKEEP 187
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 317 PAPLHEPLAVQPLR--GVARPPRHRRLVPQ 400
P LH PLA +PL GV R P RR Q
Sbjct: 138 PRRLHRPLAARPLHVPGVPRAPGARRRAAQ 167
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 386 RLVPQVPPRLQEELRPVHHTRSAQLHHNALRGAAP 490
RL+P+VPPRL LRP H R+ + +A A+P
Sbjct: 9 RLLPEVPPRL---LRP-HLRRTLSVRASASASASP 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,667
Number of Sequences: 37544
Number of extensions: 270580
Number of successful extensions: 1047
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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