Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L09
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    35   0.042
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    35   0.042
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    32   0.39 
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    32   0.39 
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 281 LRGGPVHVGVRDPAPLHEPLAVQP-LRGVARPPRHRRLVPQVPP 409
           +RGGPV VGV  P P    + + P L+G   PP    ++P  PP
Sbjct: 760 MRGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPP 803


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 281 LRGGPVHVGVRDPAPLHEPLAVQP-LRGVARPPRHRRLVPQVPP 409
           +RGGPV VGV  P P    + + P L+G   PP    ++P  PP
Sbjct: 760 MRGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPP 803


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +2

Query: 257 AGAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPP 409
           AG++     RG P H     P P+H P A+ P      PP  R   P  PP
Sbjct: 259 AGSDNDLSYRGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +2

Query: 257 AGAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPP 409
           AG++     RG P H     P P+H P A+ P      PP  R   P  PP
Sbjct: 259 AGSDNDLSYRGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 386 RLVPQVPPRLQEELRPVHHTRSAQLHHNALRGAAPVQN*SLPP 514
           R VP  PP  Q      HH +  Q+H   L GAAP  + S PP
Sbjct: 56  RNVPWGPPGRQGPAVHQHH-QMVQVHTRRLGGAAPTMHHSRPP 97


>Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical
           protein C18D4.6a protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 260 GAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPPRLQ 418
           G  G RV+   PV +  R PAP    + VQ    V   P       Q PP L+
Sbjct: 245 GPTGNRVVPLFPVQIRARPPAPSQTIIRVQETERVKLEPTDNSYEEQKPPLLE 297


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 279 SFVEDQYMSVFAILLPYTNPSRYNHYVVS--LAHHVIAAWFLKC 404
           S V  +Y+ +F  L+ YT+P  Y H  ++   A      WFL C
Sbjct: 570 SEVIKEYLGIFYHLVAYTDPVLYKHLKINGFDAELFAIPWFLTC 613


>Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = +2

Query: 260 GAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPPRLQEELRPVH 439
           GA   R   GGP  VGV          A    RGV R P   R+VP  P  +Q   RP  
Sbjct: 212 GAHPGRFRAGGPTGVGVVSRHTRQSGAA----RGVLRGPNGNRVVPLFP--VQIRARPPA 265

Query: 440 HTRS 451
            TR+
Sbjct: 266 PTRT 269


>AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = +2

Query: 260 GAEGVRVLRGGPVHVGVRDPAPLHEPLAVQPLRGVARPPRHRRLVPQVPPRLQEELRPVH 439
           GA   R   GGP  VGV          A    RGV R P   R+VP  P  +Q   RP  
Sbjct: 212 GAHPGRFRAGGPTGVGVVSRHTRQSGAA----RGVLRGPNGNRVVPLFP--VQIRARPPA 265

Query: 440 HTRS 451
            TR+
Sbjct: 266 PTRT 269


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 317  PAPLHEPLAVQPLRGVARPPRHRRLVPQVP-PRLQEELRPVHHTRSAQ 457
            PAP   P  V+PL  V   P+ +   P+ P P      +P  HT  AQ
Sbjct: 1752 PAPTSAPQIVEPLPPVQPLPQPQPTEPEEPLPIATPAPQPTEHTYGAQ 1799


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 132 IFTLETRETMVKMLPEVLLDLSKISDTQAIASPMLEFLST--LTRVPRVFASFVEDQ 296
           I  LET E       E L   S +  TQ   SP++EF  T    R+  +F S  EDQ
Sbjct: 798 IENLETFEIKEGKTQEDLPSKSPMDPTQTSGSPLVEFRMTEEQERLEMLFQSLSEDQ 854


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 114 YINALTIFTLETRETMVKMLPEVLLDLSKISDTQAIASPM-LEFLSTLTRVPRVFASFVE 290
           YI   T+  L +R  +++ LP++L  +S+I+  +   SPM L++  + ++  +   +FV+
Sbjct: 76  YIIIQTLLPL-SRNLLIRQLPKILTFISQINVDKQCNSPMFLKYFFSPSKKLKFIKNFVQ 134

Query: 291 DQYMS 305
              M+
Sbjct: 135 GMNMT 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,183
Number of Sequences: 27780
Number of extensions: 196196
Number of successful extensions: 725
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)