Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L09
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   5.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 407 PRLQEELRPVHHTRSAQLHHNAL 475
           PR QEEL  V   R++  H+NAL
Sbjct: 180 PRQQEELCLVCGDRASGYHYNAL 202


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 446 RSAQLHHNALRGAAPVQN 499
           +S ++HH AL+ A P  N
Sbjct: 233 KSVEMHHEALQEAVPGDN 250


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 446 RSAQLHHNALRGAAPVQN 499
           +S ++HH AL+ A P  N
Sbjct: 290 KSVEMHHEALQEAVPGDN 307


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 494 VLELLLEGHYDVVVQTVYDEPDEV 423
           ++  LLE   D+VV + Y EP  V
Sbjct: 254 IINTLLERSVDLVVTSTYCEPQVV 277


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 446 RSAQLHHNALRGAAPVQN 499
           +S ++HH AL  A P  N
Sbjct: 290 KSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 446 RSAQLHHNALRGAAPVQN 499
           +S ++HH AL  A P  N
Sbjct: 1   KSVEMHHEALTEALPGDN 18


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 315 ILLPYTNPSRYNHY 356
           IL+P+ NP+  N+Y
Sbjct: 3   ILIPHRNPASANYY 16


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 395 PQVPPRLQEELRPVHHTRSAQLHHNALRGAAPVQN*SLPPGQRQRG 532
           P+ PP  + ++R   + +  Q H + + G    ++ S  PG    G
Sbjct: 78  PRFPPYNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPSPGMGHMG 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,287
Number of Sequences: 438
Number of extensions: 3063
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)