Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L08
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 33 0.025
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.043
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 30 0.30
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.53
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 29 0.53
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 29 0.70
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 1.6
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.8
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 3.7
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.9
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 6.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.5
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 6.5
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 6.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.6
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 LSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQ--QNKAVSSSNSNT 209
LSG N++ +N+ SG N +S ++NQ Q S+ Q + ++SS+ N+
Sbjct: 549 LSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNS 608
Query: 210 NTYAGYNSGLNADV--NNQIEYTDN 278
N YN+ N + NN Y +N
Sbjct: 609 NKQ-NYNNNNNQNYGNNNNQNYNNN 632
Score = 28.3 bits (60), Expect = 0.92
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 69 DSQNSHLSNAYSGFNTNAHSTSSNQHR---YQFKSNEQQNKAVSSSNSNTNTYAGYNSGL 239
+S + + +N SG N H SS+ + F ++ N + N+N N G N+
Sbjct: 568 NSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQ 627
Query: 240 NADVNN 257
N + NN
Sbjct: 628 NYNNNN 633
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 24 SQAHLSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQH---RYQFKSNEQQNKAVSS 194
S A +SG S NS+ SN S + N +TS+N+ + S + SS
Sbjct: 501 SAAAVSGLIGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSS 560
Query: 195 SNSN--TNTYAGYNSGLNADVNNQ 260
N+N N+ +G + N+ NNQ
Sbjct: 561 GNNNNNNNSNSGNYNNNNSGNNNQ 584
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 32.7 bits (71), Expect = 0.043
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 81 SHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNTYAGYNSGLNADVN 254
S L+N+ +G+ +N +SSN + +V +NS TN+ +NS +A N
Sbjct: 116 SSLANSVTGYASNYTQSSSNSTSTMNSTGSVSGGSVYPTNSTTNSSISWNSSTSAATN 173
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 29.9 bits (64), Expect = 0.30
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +3
Query: 39 SGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQ 176
S +Q + ++ L+N Y+ N + +N+H++++ N Q
Sbjct: 4 SARQLSVAEQNGESGRLNNGYTSNNIQQYKDETNRHQFEYNQNRNQ 49
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 21 DSQAHLSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSS 194
DS++ S + DST+ S + S++ G N+N +T+S + Q +N ++ +S
Sbjct: 289 DSESESSSEDSDSTSSSSDSDSSSSSEDG-NSNTDTTTSGEVSAQSSTNSTSSEESTS 345
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +3
Query: 21 DSQAHLSGQQYDSTAIDSQN-----SHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKA 185
DS++ S + DS++ S + S S++ S + + +SS+ + +S+ + + +
Sbjct: 242 DSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDS 301
Query: 186 VSSSNSNTNTYAGYNSGLNADVNNQIE 266
SSS+ + ++ + + N D E
Sbjct: 302 TSSSSDSDSSSSSEDGNSNTDTTTSGE 328
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 115 PTHIPLRLINTGINSNPMNNKTKQYLVQIPTQIRTLVITQV*MLM*ITKSNIQITNQKA 291
P HIPL ++ G+N N +K L Q T + ++ L+ I +S+I + +++
Sbjct: 253 PMHIPLGVLTVGLNKYSWRNVSKHILQQAATVKNADNLAEI--LLSINQSSIPLIQERS 309
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 75 QNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNTYAGYNSGLNADV 251
QN N S FN+++HS + + ++ S N++ ++Y N N DV
Sbjct: 301 QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNNSIDSYISPNQSPNTDV 359
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +3
Query: 69 DSQNSHLSNA--YSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSN-SNTNTYAGYNS-- 233
+S ++ +NA YS T A+S SSN + SN + + N ++N Y Y +
Sbjct: 21 ESNSNTATNAPSYSVGGTTANSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASN 80
Query: 234 --GLNADVNNQIEY 269
G N NN Y
Sbjct: 81 TYGSNGSSNNYGNY 94
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 75 QNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNTYAG 224
Q S Y +TN SN FK N N ++S + + YAG
Sbjct: 118 QQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTSILSNSKYAG 167
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 69 DSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNT 215
D N+ LSN+ F S +N H + +SN K + + +T++
Sbjct: 250 DEDNNDLSNSKQIFQQMRRSLGANSHFIRLRSNYISAKPLDTDRYDTSS 298
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 456 FGNENHIDAITMYLDFRRQQLTFEI 382
+G + ID+ITM+ D+R Q+ +++
Sbjct: 231 YGRFDDIDSITMFADYRVPQILWQL 255
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 24 SQAHLSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNS 203
S + S S++ S + S++ S +++ S+SS++ S++ +K SSS+
Sbjct: 168 SSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSK-FSSSSF 226
Query: 204 NTNTYAGYNSGLNADVNN 257
T+T +S A V+N
Sbjct: 227 ITSTTPASSSSSGAIVSN 244
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 377 PRISKVNCCRRKSRYMVIASIWFSFP 454
PR S VN CR RYM + W P
Sbjct: 54 PRESTVNHCRECERYMQPPNNWMIAP 79
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 SNAYSGFNTNAHSTS-SNQHRYQFKSNEQQNKAVSSSNSNTNTYAGYNSGLN 242
S A SG +T ++++S SN+ + S ++ +S+ + N Y+ Y G N
Sbjct: 274 SPALSGSSTPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYSHYQHGFN 325
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 57 STAIDSQNSHLSNAYSGFN--TNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNTYAGYN 230
STA + + S A S N T+A +TSS+ ++ + SSS ++T + +
Sbjct: 183 STAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 242
Query: 231 SGLNADVNNQIEYTDN 278
S +++ V++ T +
Sbjct: 243 SSISSTVSSSTPLTSS 258
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 427 DRINMVLVSKKIDIT*IQRIVIVKKIHIYENHGLTILTN 543
DR VLV++++ + R + +I + +NHG+ +L N
Sbjct: 758 DRTRGVLVAQELGYVVLARSLRQYRIILSKNHGIQVLLN 796
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 57 STAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNTYAGY 227
ST+ ++N + +G T A + +S HR +N Q N + SNSN + + +
Sbjct: 177 STSNSTRNGTSAATSNGTGTGAGTGAS--HRSSPVTNRQTNNTSALSNSNAHIMSSF 231
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 8.6
Identities = 19/91 (20%), Positives = 37/91 (40%)
Frame = +3
Query: 3 TRELYEDSQAHLSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNK 182
++++ D + G D+ AIDS T ++S NQ + FKS+E +
Sbjct: 1643 SKDIDADEDLEIIGSS-DNKAIDSNGEGFLIEKDNIGTGSYS---NQQSFDFKSSESDSF 1698
Query: 183 AVSSSNSNTNTYAGYNSGLNADVNNQIEYTD 275
S + + + ++ + N+ Y D
Sbjct: 1699 PQKSPSVESFSIIDNDNPFHEGQNSSTGYKD 1729
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 177 NKAVSSSNSNTNTYAGYNSGLNADVNNQIEYTDN 278
N + SS++ ++ + ++S N D+N I++T+N
Sbjct: 157 NVSFPSSSTPPSSDSNFSSIQNTDLNTSIKFTEN 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,867
Number of Sequences: 5004
Number of extensions: 44884
Number of successful extensions: 172
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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