Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L08
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.71
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 30 1.2
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 30 1.2
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 30 1.6
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 29 2.9
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.9
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769... 29 3.8
09_02_0476 + 9728729-9730739,9730930-9730991 28 5.0
08_02_1195 - 25149891-25151402,25152194-25152493 28 5.0
04_04_1287 - 32390422-32391588,32392472-32392645 28 6.6
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 28 6.6
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 TRELYEDSQAHLSGQQYDSTAIDSQNSHL---SNAYSGFNTNAHSTSSNQHRYQFKSNEQ 173
T + + + H S Y S D+Q+S S +YS + + S+S ++H+ + S +
Sbjct: 168 THDKQKKKRKHYSSDSYSSDYSDTQSSDSGSESESYSSSSLDTSSSSDHRHKRRKSSKKD 227
Query: 174 QNKAVSSSNSNTNT 215
++++ + + T
Sbjct: 228 KHRSAKGKSKHKKT 241
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 336 DPYVIKPVGGVNDAQESQKLTAAAGNLGTW*SHQYGSR---FQKNRHYLNTEDCDCEEDS 506
DP P DA ++Q + AAG G W +QYG + + + + +DCD D
Sbjct: 661 DPAQAWPQPNAYDAIQAQMV--AAGYQGEWSGYQYGEQQMAYPEQYMQQSAQDCDVLADP 718
Query: 507 HI-REPR 524
+I ++PR
Sbjct: 719 NITQDPR 725
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 88 KCEFCESIAVESYCCPDKCACESS*SSLV 2
KCE CE I+ E C D+ C + SLV
Sbjct: 1122 KCELCEDISPEDTCVGDQSDCNGTNLSLV 1150
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +3
Query: 27 QAHLSGQQYDSTAIDSQNSHLSNAYSG-----------FNTNAHSTSSNQHRYQFKSNEQ 173
Q +S D+ DSQ+S+ SNAY+ N N + +SN + F++ Q
Sbjct: 555 QELISALTNDTNTSDSQHSNYSNAYNSQHSNYSDAVDCLNNNMSACNSNDQSHDFQNCYQ 614
Query: 174 QNKAVSSSNSNTN 212
+++ V SS + N
Sbjct: 615 RDREVESSATCMN 627
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 231 SGLNA-DVNNQIEYTDNXXXXXXXXXXXXXXWERQGDPYVIKPVGGVNDAQESQKLTAAA 407
+G+N DVN Q++ N W + G VI P GG+N Q TA
Sbjct: 142 TGVNRPDVNYQVQ---NVALPRNGSDPLLREWVKPGHNPVIVPEGGINATQFRDPTTAWR 198
Query: 408 GNLGTW 425
G G W
Sbjct: 199 GADGHW 204
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 57 STAID-SQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNT 209
+TA+ Q S+ SG HS++S+ +Q + + + +SSS+S T
Sbjct: 417 ATAVQFQQQQQHSSLSSGITVQFHSSNSSSVSFQQQQSSSSSSTISSSSSTT 468
>04_04_1411 +
33375988-33376045,33376161-33376551,33376830-33376912,
33377209-33377297,33377481-33377554,33377768-33377818,
33377861-33377900,33378567-33378593,33379191-33379874
Length = 498
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 78 NSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNKAVSSSNSNTNT 215
N +SN Y+ N + H QH++Q + +QQ++ S S+ N+
Sbjct: 413 NGAMSNCYT--NVSLHE-QQQQHQHQHQQEQQQDQQDDQSQSSNNS 455
>09_02_0476 + 9728729-9730739,9730930-9730991
Length = 690
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 TRELYEDSQAHLSGQQYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSNEQQNK 182
+RE E +Q +G++ A + + ++ + +++S ++ Y ++N +
Sbjct: 281 SREFSEYTQDANTGEE-SFAAYGKTANGAAESFRTYGNHSNSIATGFDNYGDRANGAADA 339
Query: 183 AVS---SSNSNTNTYAGYNSGLNADVNNQIEYTDN 278
S S N+ NT+ Y SG NA V++ Y D+
Sbjct: 340 FSSYGASGNTPENTFKSYASGSNAGVDDFKGYRDD 374
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 48 QYDSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHR 149
Q D A ++H N +S N+ H +SSN+HR
Sbjct: 134 QEDEVAFSDFDNH--NTFSSSNSELHFSSSNEHR 165
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 54 DSTAIDSQNSHLSNAYSGFNTNAHSTSSNQHRYQFKSN----EQQNKAVSSSNSNTN 212
DST ++ H N + + ++S QH + ++N E Q+K +N N+N
Sbjct: 241 DSTPATTEEPHPYNTTASESNPQENSSPEQHFIKLRTNREDDEPQDKTTGDANDNSN 297
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 15 YEDSQAHLSGQQYDSTAIDSQNSHLSN-----AYSGFNTNAHSTSSNQHRYQFKSNEQQN 179
Y +S S Y + A S NS ++ + S +N+N+ ++++ + + ++
Sbjct: 769 YYNSSTWSSNSTYSNNAAWSSNSSYNSNSAWSSNSSYNSNSAWSNNSNNSWSGSYSDNGG 828
Query: 180 KAVSSSNSNTNTYAGYNS 233
SS S N AGY+S
Sbjct: 829 TGSGSSASRPNQTAGYSS 846
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,175
Number of Sequences: 37544
Number of extensions: 267180
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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