Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L07
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   1.00 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   1.3  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    23   5.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    23   7.0  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    23   7.0  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    23   7.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    23   7.0  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    22   9.3  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    22   9.3  

>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 149 TNENRVPVQAGSLGNKLSLRNNRFIDLP 66
           +N + + V + SL ++LSLRNN  I +P
Sbjct: 52  SNNSNLAVTSRSLRHRLSLRNNTPIFMP 79


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 188 SICKTTTSVP*KQTNENRVPVQAGSLGNKLSLR 90
           S+C+   S+     N NR PV+    G+ LS R
Sbjct: 243 SVCQAAESISLIAVNNNRPPVELPKSGDVLSNR 275


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  SINLLLRSDSLFPSDPA*TGTRFSFVCFYGTLVV 174
           S+N+ L  D +  ++   T   F F+C Y + +V
Sbjct: 247 SVNVALMKDDVGDAEKLPTENWFDFICNYVSFMV 280


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 83  YYCVVTVYFQAIQPERGPGFRLFVFMERSLWFYIC 187
           +Y V  V +    PE+    +  VF     WF++C
Sbjct: 262 FYIVGAVIYALRIPEKWSPGKYDVFGSSHQWFHVC 296


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 157 KNKQTKTGSPFRLDRLEINCHYAIIGLSTSLSRSNRINKV 38
           KNK+  TG+   + RL   C  A   LS+S   S  I+ +
Sbjct: 246 KNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSL 285


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 157 KNKQTKTGSPFRLDRLEINCHYAIIGLSTSLSRSNRINKV 38
           KNK+  TG+   + RL   C  A   LS+S   S  I+ +
Sbjct: 246 KNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSL 285


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 4   EGIRQLAHTFN*PYLFDLILKGRSINLLLRSDSLF-PSD 117
           EG+ +L+H  N  +L DL+   + +  L+  D++F P D
Sbjct: 513 EGVARLSHLLNIEFLGDLL---QVLRELVMDDTVFLPKD 548


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 160 HKNKQTKTGSPFRL 119
           H +K  K+G PFRL
Sbjct: 83  HHSKSLKSGRPFRL 96


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  LFDLILKGRSINLLLRSDSLFP 111
           ++D+ L G  ++++  SDS FP
Sbjct: 361 IYDVQLGGPGVSVVTDSDSFFP 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,744
Number of Sequences: 5004
Number of extensions: 13082
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)