Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L07
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 30 0.23
05_01_0187 + 1349725-1352238 30 0.23
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 29 0.52
01_01_0433 + 3282195-3285185 26 3.7
12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507 26 4.9
08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634 26 4.9
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 26 4.9
01_01_0088 + 688792-691441,691629-693013 26 4.9
05_03_0373 - 13194723-13195847,13196219-13196809 25 6.4
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 25 6.4
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 25 8.5
07_02_0018 - 11820465-11821508,11822684-11823661 25 8.5
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 25 8.5
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 175 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 68
P R F K + +++ RL +N HY GLST+
Sbjct: 538 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 573
>05_01_0187 + 1349725-1352238
Length = 837
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 175 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 68
P R F K + +++ RL +N HY GLST+
Sbjct: 501 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 536
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 110 QAIQPERGPGFRLFVFMERSLW 175
QA+ PER PGF L V SLW
Sbjct: 559 QAVFPERTPGFVLDVLARSSLW 580
>01_01_0433 + 3282195-3285185
Length = 996
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 143 ENRVPVQAGSLGNKLSLRNNRFIDLPFKI 57
E +P+ S ++L NNRF +PF +
Sbjct: 577 EGPIPIPKESTDSQLDYSNNRFSSMPFDL 605
>12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507
Length = 254
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 165 RSIKTNKRKPGPRSGW 118
RSI KR P PRSGW
Sbjct: 38 RSIIREKRIPWPRSGW 53
>08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634
Length = 245
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 165 RSIKTNKRKPGPRSGW 118
RSI KR P PRSGW
Sbjct: 38 RSIIREKRIPWPRSGW 53
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 127 FRLDRLEINCHYAIIGLSTSLSRSNRINKVN*MY 26
+ D LEI+C++ IG+ S +++ I + Y
Sbjct: 958 YEFDSLEISCYWDSIGIINSSGKNDTIEGIGSQY 991
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 127 FRLDRLEINCHYAIIGLSTSLSRSNRINKVN*MY 26
+ D LEI+C++ IG+ S +++ I + Y
Sbjct: 514 YEFDSLEISCYWDSIGIINSSGKNDTIEGIGSQY 547
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 152 QTNENRVPVQAGSLGNKLSLRNNRFID 72
Q ENR P GS NK ++RN +F+D
Sbjct: 222 QLLENRFPF--GSCINKTAIRNPKFVD 246
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 10 IRQLAHTFN*PYLFDLILKGRSINLLL 90
+ +L +TF P+LF L+L G + L L
Sbjct: 861 LEELIYTFGGPWLFGLLLSGLLVLLAL 887
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 181 VKPQRAFHKNKQTKT-GSPFRLDRLEINCHYA 89
V+P A + K G RLDR +N HYA
Sbjct: 472 VQPDEAIYLKINNKIPGLGMRLDRSNLNLHYA 503
>07_02_0018 - 11820465-11821508,11822684-11823661
Length = 673
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 67 GRSINLLLRSDSLFPSDP 120
GR ++LL LFPSDP
Sbjct: 112 GRQLHLLALRSGLFPSDP 129
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 168 ERSIKTNKRKPGPRSGWIAWK 106
+R +T K KPG R G WK
Sbjct: 25 KRQRRTAKEKPGARKGATEWK 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,304,668
Number of Sequences: 37544
Number of extensions: 82574
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -