Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L06
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   2.3  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   2.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    23   9.4  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 120  RYEKGSYLLFKAGKWKFNIEGLERHISRI 206
            R E   +  +K G WK  + GL+ HIS +
Sbjct: 1290 REEMEGFRFWKKGYWKKFLRGLKYHISAL 1318


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  NKYRLSKSIILVRYEKGSYLLFKAGKWKFNIEGLERH 194
           NKY   K    VR+E+G+  ++  G W+F  +  + H
Sbjct: 66  NKYDFHK----VRHEEGAPSIYGEGAWEFRHDDFQLH 98


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 126 EKGSYLLFKAGKWKFNIEGLERHISRIKKTYMLQKENQILPFLSSDQGL 272
           E+GS     AG WK ++  L   I+   K  ++   +  L  + S++ L
Sbjct: 151 EEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFSEEEL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,230
Number of Sequences: 5004
Number of extensions: 24250
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)