Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L06
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical ...    26   5.8  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    26   7.7  
AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    26   7.7  
AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    26   7.7  

>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 84  NKYRLSKSIILVRYEKGSYLLFKAGKWKFNIEGLERHIS 200
           NKYR + +++LV Y   +YL+ +A      +EG+   IS
Sbjct: 825 NKYRPNCNVVLVGYGASTYLIHRAANL---VEGISAIIS 860


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
            protein F23H11.4a protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 36   FSVVESVNLLKTLHCPNKYRLSKSIIL-VRYE-KGSYLLFKAGKWKFNIEGLERHISRIK 209
            F  +   NL++ L  PN  ++SK ++  + +  K +YLLF   K++FN   +     +IK
Sbjct: 839  FECLAGGNLIRRL--PNAQKMSKCVLQWIDWNCKDAYLLFDHDKYQFNGTDMSCFTGKIK 896


>Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical
           protein T05C12.8 protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 95  IKQEYNSGALRKRLIFIVQGRKMEVQHRRPRAAH--IQNQENVYVTKGKSDLAVPVKRPR 268
           + +E  S +L K  +  VQGR+     +R  +AH  + +Q    V  G  D + P   P+
Sbjct: 121 LSREKISNSLAKGNVAAVQGREYLKMVKRSSSAHSRLMSQRTFSVESGSIDSSEP-STPQ 179

Query: 269 ISGP 280
           ++ P
Sbjct: 180 LTSP 183


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +3

Query: 132 GSYLLFKAGKWKFN 173
           G+Y++F+ GKW++N
Sbjct: 515 GTYIVFELGKWRYN 528


>AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical
           protein T22B11.2 protein.
          Length = 368

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 12  RSARVGNAFSVVESVNLLKTLH-CPNKYRLSKSIILVRYEKGSYLLFKAGKWKFNIE 179
           +S ++   F   +++  L+++  C ++YRLS  I+ +    G+Y L++  ++K  I+
Sbjct: 5   KSEQLPEEFCFQKNIRNLRSMRLCADEYRLSLIIVFIILFFGAYFLYQV-QYKTGID 60


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +3

Query: 54  VNLLKTLHCPNKYRLSKSIILVRYEKGSYLLFKAGKWKFNIEGLERHISRIKKTYMLQKE 233
           V +L     PN +++    ++V    GSYL F  G+    ++   R I+R +KT ++   
Sbjct: 98  VGVLSWFGVPNTFQILLVWLMVLLTVGSYLYFFEGRSSILVQNKFR-ITR-QKTRVIYYF 155

Query: 234 NQILPFLSS 260
             ++P++SS
Sbjct: 156 LFLIPWMSS 164


>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 221 VTKGKSDLAVPVKRPRISGPR 283
           V + K+ L +PV+RP + GPR
Sbjct: 275 VDEAKNYLLLPVERPNMQGPR 295


>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 235 FSFCNIYVFLILDMCRSRPSMLNFHFPALNNKY-EP 131
           FSFC   + +IL++  S   +L + +PA + K+ EP
Sbjct: 31  FSFCFFIISIILELNASVNMLLFWGYPASDTKFCEP 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,194,746
Number of Sequences: 27780
Number of extensions: 137883
Number of successful extensions: 320
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)