Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L05
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   2.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 166 IEPTSADISKN-KYLRTLWPGRVPVGE 243
           +E    ++S++ KYL TL PG+V +GE
Sbjct: 142 MEEGKVEVSRDGKYLSTLAPGKV-LGE 167


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 WRPSYNDTRSRLIVYNIY 304
           W+P   + +  LIVY +Y
Sbjct: 19  WKPLPENLKEDLIVYQVY 36


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 370 LPGSSIWSCLFFFMLILIG 388


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 227 LPGQSVRKYLFFDISALVG 171
           LPG S+   LFF +  L+G
Sbjct: 423 LPGSSIWSCLFFFMLILIG 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,334
Number of Sequences: 438
Number of extensions: 3090
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)