Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L04
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 31 0.16
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 27 2.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 3.4
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 4.5
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 4.5
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 7.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 25 7.8
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.8
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 25 7.8
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 25 7.8
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.8
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 30.7 bits (66), Expect = 0.16
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 310 LIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQK 489
LI +I++I + + +VKD S +V + +L +L V V R+K
Sbjct: 299 LIPGIIEFIRNSWSDACPVVKDGSNSPSASKVCRTVLSMLGLFTEQVFSVADEPNNHRKK 358
Query: 490 LSVVLRAVNR 519
+S VLR +NR
Sbjct: 359 ISQVLRKINR 368
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 393 IQVFTDVFDDYSVRGQLIVDPIDQYLY 313
+++ +DV DD +V GQ+IV + QY++
Sbjct: 82 VKLASDVPDDKNVTGQMIVKDMLQYIW 108
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 16 IINNKNFEMSSPRPNSPRTP 75
+ N +FE SP PN RTP
Sbjct: 606 VSRNTHFESKSPHPNYSRTP 625
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 520 PGSLLSTRQTASDVALLQTASPPARPAWSRS 428
P + +T T + + A PP RPA++RS
Sbjct: 189 PRTASNTSPTPNSIKSAHPAEPPKRPAFTRS 219
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 37 EMSSPRPNSPRTPVLPKKDDKEESFWDXXXXXXXXXXXXEVQDVQAEGKFAIDSPGSPTA 216
E +P P P P +DD+ + D +DVQ E + D+P + A
Sbjct: 17 EQQAPPPQQPAHAAAPAQDDEPDDDIDALIEELFS------EDVQEEQEDNDDAPAAGEA 70
Query: 217 PEIPPE 234
+P E
Sbjct: 71 KAVPEE 76
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 367 VKDISEDLYDGQVLQKLLEVLTE 435
VK++S D + VLQK LE+ E
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPE 354
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 259 ERAIIEPRSLEDPRVKELIQV--LIDWINDELAPHRIIVKDISED 387
E+AI E E E +++ W+N++ H+I+++ IS++
Sbjct: 419 EKAIEEAAEAERAEADERLRLENFSTWVNEKRETHKILLEKISKN 463
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 7.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 382 EDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQKLSVVLR---AVNRVLYGTSKPVPK 552
ED GQ++ E+L+E + D + Q E+ ++KL + R A ++L + V
Sbjct: 145 EDTDKGQIMYSDDEILSEGEEDALQKQQEEKLSKKKLRKLKRMTVAQLKMLSEKADVVEW 204
Query: 553 WSVDS 567
W V S
Sbjct: 205 WDVSS 209
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -1
Query: 350 ANSSLIQSINTCISSFTLGSSRDLGSIIALSSFSFKLYSSGGISGAVGLPG 198
+N++ + + T S + + I+ F F +YS SG G PG
Sbjct: 208 SNTNSVNPLQTTFESTNIQEISQSRTKISKPKFKFSVYSDADGSGKDGQPG 258
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 122 ILSQKDSSLSSFLGKTGVLGELGR 51
+++ + ++SFLG GV G LGR
Sbjct: 87 VVNDESIVVASFLGLVGVFGTLGR 110
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 190 IDSPGSPTAPEIPPEEYS 243
IDSP S A PPE+YS
Sbjct: 284 IDSPYSALAASPPPEDYS 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,997
Number of Sequences: 5004
Number of extensions: 42390
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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