Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L04
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0073 - 17899175-17899756                                         30   1.1  
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    29   2.0  
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    28   4.6  
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177...    28   6.0  
08_01_0601 - 5268520-5271112,5272448-5272950                           28   6.0  
09_02_0331 - 7324332-7325924,7327220-7327402                           27   8.0  

>01_05_0073 - 17899175-17899756
          Length = 193

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = -2

Query: 526 TEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVRHTGLH*CL*RLFCEGP 347
           T P  L   R+ ASD+A  Q    P   AW+R     A    V H   H  L +L    P
Sbjct: 80  TRP-KLSGKRKAASDLAWRQGQWQPRPAAWARHAATTARDGFVAHVRHHCLLGKLIVGAP 138

Query: 346 TH 341
            H
Sbjct: 139 VH 140


>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 499 RQTASDVALLQTASPPARPAWSRSEPPGASG 407
           R+T SD   L   SPP RP   R+ PP   G
Sbjct: 2   RRTTSDDEALPRCSPPPRPRRCRARPPPPVG 32


>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 562 PRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTA--SPPARPAWSRSEPP 419
           PR++SG     R  P    +   ++S  A    A  SP  RP W R +PP
Sbjct: 32  PRASSGDAAERRHLPKPAAAANCSSSATATPPNAATSPSKRPPWQRPQPP 81


>11_04_0068 -
           13116037-13116414,13116501-13116947,13117026-13117757,
           13118235-13118348
          Length = 556

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 535 TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPP 419
           TF   P  L+  R TAS         PP RPA++ S PP
Sbjct: 501 TFIQWPKDLIEIRVTASPTTA-PGGRPPKRPAFAPSAPP 538


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 193 DSPGSPTAPE-IPPEEYSLNENEERAIIE--PRSLEDPRVKEL 312
           D+P  PT+PE +PPE+ SL++    A  E  P S E    K++
Sbjct: 426 DTPPPPTSPEQMPPEKDSLDDIAPAAASETAPTSTEQTTKKKM 468


>09_02_0331 - 7324332-7325924,7327220-7327402
          Length = 591

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  SSPRPNSPRTPVLP---KKDDKEESFWDXXXXXXXXXXXXEVQDVQAEGKFAIDSPGSPT 213
           SS  P+ P  P  P   +K+ +E                  V DV+     +  S GSP 
Sbjct: 36  SSRHPSYPLCPPHPQRQRKEKRERGEVQLTTVIGNGGTKAIVIDVEPGDDSSPTSNGSPA 95

Query: 214 APEIPPEEYSLNE 252
           APE   + YS  E
Sbjct: 96  APEAEGQRYSSQE 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,223
Number of Sequences: 37544
Number of extensions: 286307
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)