Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L03
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   0.56 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   3.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   9.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    24   9.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.1  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 110  YVLLKICPNLNICVIFFG-SFYSF 178
            +++L IC  +NICV  +G SFY F
Sbjct: 1304 FLILSICYTINICVKVYGLSFYYF 1327


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 301 NYNSTITELYHVKCHQNYIVYR 366
           +Y STIT LYHV+ H+  +  R
Sbjct: 568 DYLSTITMLYHVRQHELNLALR 589


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 234  YCKMAAFCYNHYSGSD 281
            YC  A FC N+YS  D
Sbjct: 2165 YCMFAQFCDNNYSSPD 2180


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 400 SLFLTHHLAVFVYILCNFDGILRDIVQLWYCYSYN 296
           +LF    LA+ + +  NF   L+  V  W C  YN
Sbjct: 132 ALFQKDELALLLDLYINFLQGLKKTVLYWLCKEYN 166


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 325  LYHVKCHQNYIVYRQILRDD 384
            L H+ C +NY V R + R+D
Sbjct: 1431 LMHLGCFKNYYVARSMYRND 1450


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 277 VIRIFQDYNYNSTITELYHVKCHQNYIVYRQILRDDELKIKTTRPKSRQVS 429
           ++R F +  Y + +++ +HV CH  Y  +  +    +  I+T++ K  ++S
Sbjct: 247 ILRQFVEV-YRNGVSQNWHVPCHMIY-KFWNVKLCQKTSIETSKKKDSELS 295


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 184  EKAKVLNHTAKSDVRNTIAKWRPSVTTTTAGVIRIFQDYNYNST 315
            E+A+      K+ +RN+ +  RPS+T +   + R   DY  N T
Sbjct: 893  EQARKSIEIDKAIIRNSQSTSRPSLTASRPSLSRRRNDYINNVT 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,639
Number of Sequences: 5004
Number of extensions: 29647
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)