Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L03
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    29   1.3  
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506...    27   9.0  
01_02_0081 + 10943368-10943787                                         27   9.0  

>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 83  VSNANRVIFYVLLKICPNLNICVI 154
           VS+ N V+F+ L K  PNLN C++
Sbjct: 764 VSSGNYVLFFKLYKQAPNLNSCLM 787


>02_05_0288 -
           27549718-27549940,27550025-27550102,27550282-27550674,
           27550752-27551347,27552232-27552978
          Length = 678

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 306 IVIILKYPNHSRCSGCNRRPPFCN 235
           I +  K  NH+ C    + PPFC+
Sbjct: 417 IAVWQKPANHASCKASRKSPPFCS 440


>01_02_0081 + 10943368-10943787
          Length = 139

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 270 CSGCNRRPPFCNSVPN 223
           C GC R PP C   P+
Sbjct: 92  CDGCGRYPPMCEDEPS 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,543,732
Number of Sequences: 37544
Number of extensions: 153971
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)