Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L02
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     27   9.8  

>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
 Frame = -2

Query: 451  LCQCHEFSAVPTPAKRWXXXXXXXXXLCRHLKNICYALSSIIDLQQIK*TISHKAPPRLH 272
            +C CHE + +P   +            C  L+ +   L     LQ I+        P LH
Sbjct: 954  ICGCHELTCLPQGLQHISSIRSLAIDNCNKLETLPEWLEHQPSLQVIR----LSGCPALH 1009

Query: 271  DIDCQIRKFN--ELKENDC-YMTDRDPAK 194
             I   + + N  E+  NDC  +T++   K
Sbjct: 1010 SISEGLLRGNSIEIHMNDCPNLTEQSSGK 1038


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,602
Number of Sequences: 37544
Number of extensions: 208715
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)