Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L01
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   1.4  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   2.4  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    26   3.1  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   5.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   7.2  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    25   7.2  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   7.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.2  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 282 FTISRYQYFFVLFIVFSYEY 341
           F +  +QYFF  FI+ S++Y
Sbjct: 127 FIVPAFQYFFAFFIIDSWQY 146


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 433 PRAGRSSVCRSAVTSASAPGPPGP 362
           PR    ++ ++A+TSAS P PP P
Sbjct: 408 PRPLNPTLLQNALTSASLPSPPTP 431


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = -1

Query: 373 PPGPTILTSNR---YSY---EKTINNTKKY**REIVKQLRG 269
           PP PTI+TS     Y+    E +IN TK +   ++VK LRG
Sbjct: 44  PPKPTIITSQVCPVYTLGRRESSINFTKGFPKAKVVKALRG 84


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 19  PTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRG 144
           PT+  T   A+   K PK A   A  ++++S      +GT G
Sbjct: 565 PTSASTNAAATTTTKKPKAAKSTAVRDDVSSASSDSDKGTTG 606


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 79  ADNAKLEEIASKYHLQV-RGTRGEHTEAEGGVYDISNKRRMGLTEYEAVKE 228
           AD  +LE +    + Q        + EA G +YDI  + R  L EY A  E
Sbjct: 143 ADLTQLEGLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLE 193


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 19  PTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNKRRM 198
           P+N+ +T  A+          D  K +  +++YH         HTEA+     I++  R 
Sbjct: 249 PSNISSTNVATTPSNTIFEMDDTLKADSSSNEYHSPTNTLPSYHTEADLDNSSIASSNRT 308

Query: 199 GLTEYEAVKEMYD 237
             TE    K++ D
Sbjct: 309 QHTEDNYNKDVSD 321


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  AKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYEAV 222
           A++  +A  Y  + R  + +  E +GG + ISN     + ++ A+
Sbjct: 370 AEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAI 414


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 258 DREVPLSC-FTISRYQYFFVLFI 323
           D +   +C +TISR +YFF++F+
Sbjct: 257 DNDNTKACNWTISRLRYFFIVFV 279


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 184 NKRRMGLTEYEAVKEMYDGIAELIKIE 264
           N R +    Y+AVK+ YD   ++  I+
Sbjct: 50  NNRNLAFKAYDAVKQKYDSSIKVFNIQ 76


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 403 SAVTSASAPGPPGPTILTSNRYSYEKTINN 314
           S V ++  P PP     ++  +SY K +NN
Sbjct: 34  SKVNASINPSPPRSNDNSNKEFSYSKDVNN 63


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 348  DVRIVGPGGPGADALVTALRH 410
            DV ++G G  G D L T++RH
Sbjct: 1899 DVIVIGGGDTGNDCLGTSVRH 1919


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 54  HGRAHGRPQVGRAECPS 4
           H  AHG PQ+  A+ PS
Sbjct: 782 HNNAHGVPQISAAQYPS 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,977
Number of Sequences: 5004
Number of extensions: 31859
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)