Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L01
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0271 - 21804629-21805836,21805997-21806015                       32   0.26 
07_01_1155 + 10857771-10858028,10858455-10859159                       30   1.0  
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921...    29   1.8  
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779...    29   3.2  
06_02_0265 - 13586552-13587985                                         29   3.2  
08_02_0532 - 18264028-18264048,18264300-18264344,18265462-182655...    28   4.2  
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919...    28   5.5  
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145...    28   5.5  
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763...    28   5.5  
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238...    27   7.3  
08_01_0955 + 9478018-9478773                                           27   7.3  
04_01_0171 - 1927238-1928728,1928819-1929016                           27   7.3  
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564...    27   9.7  

>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 469 LGKTVYIGRCASPRAGRSSVCRSAVTSASAPGPPGP-TILTSNRYSY 332
           LG  + +  CA+ RA   SVCRS   +A+   PP P  +L  +R+S+
Sbjct: 23  LGLVLRVIPCAADRARVRSVCRSWRAAAAIQRPPPPLPVLVFSRFSF 69


>07_01_1155 + 10857771-10858028,10858455-10859159
          Length = 320

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 448 GRCASPRAGRSSVCRSAVTSASAPGPPGPTIL 353
           GRC+ P+ G      +  TS SAP PP   +L
Sbjct: 17  GRCSFPQLGLGPAAPATTTSRSAPFPPNLALL 48


>06_01_1118 -
           9213785-9215051,9215811-9215992,9216075-9216611,
           9216742-9217224
          Length = 822

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 540 SFFIFVVILNASCLYFPFPYRK 475
           S  +FVVIL  S  YFPFP  K
Sbjct: 27  SLLLFVVILTVSNTYFPFPTTK 48


>11_06_0578 +
           25176304-25176388,25176503-25177032,25177267-25177997,
           25178122-25178172,25178562-25178813,25178894-25179004,
           25179102-25179183,25179460-25179489
          Length = 623

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGPTILTSNRY 338
           A P AG S+   S    ASAP PP P    S R+
Sbjct: 345 AIPAAGSSTPSSSQARKASAPAPPSPPEPPSPRH 378


>06_02_0265 - 13586552-13587985
          Length = 477

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 267 VPLSCFTISRYQYFFVLFIVFSYEYRLDVRIVGPGG-PGADALVTALRHTLERPA-RGLA 440
           VP+ C+ +   Q+   +FIV   +  ++VR   PG    AD +   LR  +E  A +G+ 
Sbjct: 372 VPMVCWPLDAEQWMNKVFIVEEMKIGIEVRGYKPGALVQADIVDAILRRIMESDAQQGVL 431

Query: 441 HRPM 452
            R M
Sbjct: 432 ERVM 435


>08_02_0532 -
           18264028-18264048,18264300-18264344,18265462-18265585,
           18265730-18265788,18266417-18266584
          Length = 138

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 404 ERRD*CVCPGTARPNNPHIQ 345
           E R  C CP  AR  NPH Q
Sbjct: 55  EERQHCACPALARMRNPHPQ 74


>12_01_0927 +
           9196230-9196427,9196499-9197190,9197317-9198351,
           9198437-9198688,9198769-9198879,9198969-9199050,
           9199325-9199516
          Length = 853

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGPTILTSNRY 338
           A P AG S+   S   +A+AP PP P    S R+
Sbjct: 379 AVPAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRH 412


>09_02_0601 +
           11112201-11112386,11112471-11114080,11114345-11114579,
           11115233-11115358
          Length = 718

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGPTILTSNRY 338
           A P AG S+   S   +A+AP PP P    S R+
Sbjct: 391 AVPAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRH 424


>09_02_0349 -
           7632140-7632234,7632348-7632449,7632864-7632962,
           7633517-7633622,7633897-7633978,7634068-7634178,
           7634259-7634510,7634596-7635688,7636157-7636829,
           7636920-7637117
          Length = 936

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGPTILTSNRY 338
           A P AG S+   S   +A+AP PP P    S R+
Sbjct: 392 AVPAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRH 425


>12_02_0233 -
           16023062-16023253,16023528-16023609,16023699-16023809,
           16023890-16024141,16024227-16024580,16024893-16025548,
           16025554-16026459,16026550-16026747
          Length = 916

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGPTILTSNRY-SYEKTINNTKK 305
           A P AG S+   S   +A+AP PP P    S R+ S    + N++K
Sbjct: 546 AVPAAGSSTPSSSQAMTAAAPAPPLPPEPPSPRHPSSPPPLRNSEK 591


>08_01_0955 + 9478018-9478773
          Length = 251

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 121 GGTSTRSPPAWHCRRPASVA*CARTRARSSP 29
           G T+T  P AW C R A    C     R++P
Sbjct: 93  GSTTTAPPAAWTCTRAAPRCRCPSRCRRAAP 123


>04_01_0171 - 1927238-1928728,1928819-1929016
          Length = 562

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 439 ASPRAGRSSVCRSAVTSASAPGPPGP 362
           A P AG S+   S   +A+AP PP P
Sbjct: 532 AFPAAGSSTPSSSQAMTAAAPAPPSP 557


>11_06_0217 -
           21353558-21353660,21354680-21355510,21356340-21356464,
           21356546-21357076,21357207-21357650,21358469-21358612
          Length = 725

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 540 SFFIFVVILNASCLYFPFPYRK 475
           S  + VVIL  S  YFPFP  K
Sbjct: 62  SLLLLVVILTVSNTYFPFPTTK 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,257
Number of Sequences: 37544
Number of extensions: 245941
Number of successful extensions: 951
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)