Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L01
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical pr...   125   2e-29
U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical pr...   125   2e-29
Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical pr...   124   4e-29
AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical ...   123   1e-28
Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical pr...   122   2e-28
AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical...   122   2e-28
U80451-10|AAB37844.1|  106|Caenorhabditis elegans Hypothetical p...    92   3e-19
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   3.8  
Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical p...    27   6.6  
U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical
           protein F46H5.3b protein.
          Length = 359

 Score =  125 bits (302), Expect = 2e-29
 Identities = 58/87 (66%), Positives = 71/87 (81%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCP+NLGTTVRASVHI+LPK++A     + I     LQ+RG  GEH+E+EGGVYDISNK
Sbjct: 273 TFCPSNLGTTVRASVHIRLPKISA-KPDFKSICDGLKLQIRGIHGEHSESEGGVYDISNK 331

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEKS 270
            R+GLTE+EAVK+MYDGIA LI +EK+
Sbjct: 332 ARLGLTEFEAVKQMYDGIAHLIALEKA 358


>U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical
           protein F46H5.3a protein.
          Length = 396

 Score =  125 bits (302), Expect = 2e-29
 Identities = 58/87 (66%), Positives = 71/87 (81%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCP+NLGTTVRASVHI+LPK++A     + I     LQ+RG  GEH+E+EGGVYDISNK
Sbjct: 310 TFCPSNLGTTVRASVHIRLPKISA-KPDFKSICDGLKLQIRGIHGEHSESEGGVYDISNK 368

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEKS 270
            R+GLTE+EAVK+MYDGIA LI +EK+
Sbjct: 369 ARLGLTEFEAVKQMYDGIAHLIALEKA 395


>Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical
           protein ZC434.8 protein.
          Length = 360

 Score =  124 bits (299), Expect = 4e-29
 Identities = 55/87 (63%), Positives = 75/87 (86%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCPTNLGTTVRASVHIKLPK++A +   ++I S   LQ+RG  GEH+E++ G+YDISNK
Sbjct: 273 TFCPTNLGTTVRASVHIKLPKISAKD-DFKKICSDMKLQIRGIHGEHSESKEGIYDISNK 331

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEKS 270
           +R+GLTEY+AV++MYDG+ +LI++EK+
Sbjct: 332 QRLGLTEYQAVRQMYDGLKKLIELEKA 358


>AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical
           protein W10C8.5 protein.
          Length = 399

 Score =  123 bits (296), Expect = 1e-28
 Identities = 58/86 (67%), Positives = 72/86 (83%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCPTNLG+TVRASVHI LPKLAA    +E I  K +LQVRG  GEH+E+ GGVYDISNK
Sbjct: 312 TFCPTNLGSTVRASVHIALPKLAARKDFIE-ICEKLNLQVRGIHGEHSESVGGVYDISNK 370

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEK 267
            R+GL+EY+AVK+MYDG+ +LI++E+
Sbjct: 371 ARLGLSEYQAVKQMYDGVKKLIEMEE 396


>Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical
           protein F44G3.2 protein.
          Length = 372

 Score =  122 bits (294), Expect = 2e-28
 Identities = 56/86 (65%), Positives = 71/86 (82%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCPTNLG+TVRASVHI LPKL+A     ++I  K  LQ+RG  GEH+E+EGGVYDISN+
Sbjct: 285 TFCPTNLGSTVRASVHIALPKLSA-REDFKQICDKLDLQLRGIHGEHSESEGGVYDISNR 343

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEK 267
            R+GL+EYEAVK+MYDG+  LI++E+
Sbjct: 344 ARLGLSEYEAVKKMYDGVKNLIEMEE 369


>AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical
           protein F32B5.1 protein.
          Length = 427

 Score =  122 bits (293), Expect = 2e-28
 Identities = 57/86 (66%), Positives = 72/86 (83%)
 Frame = +1

Query: 10  TFCPTNLGTTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNK 189
           TFCPTNLG+TVRASVHI LPKLAA    +E I  K +LQVRG  GEH+++ GGVYDISNK
Sbjct: 340 TFCPTNLGSTVRASVHIALPKLAARKDFIE-ICEKLNLQVRGIHGEHSDSVGGVYDISNK 398

Query: 190 RRMGLTEYEAVKEMYDGIAELIKIEK 267
            R+GL+EY+AVK+MYDG+ +LI++E+
Sbjct: 399 ARLGLSEYQAVKQMYDGVKKLIEMEE 424


>U80451-10|AAB37844.1|  106|Caenorhabditis elegans Hypothetical
           protein F11G11.13 protein.
          Length = 106

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 39/76 (51%), Positives = 64/76 (84%)
 Frame = +1

Query: 34  TTVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEY 213
           T++++SVHIKLPK++A +   ++I S+  LQ+RG  GE+++ + G+YDISNK+R+GLTEY
Sbjct: 24  TSLKSSVHIKLPKISAKD-DFKKICSEMKLQIRGIHGEYSDLKEGIYDISNKQRLGLTEY 82

Query: 214 EAVKEMYDGIAELIKI 261
           +AV++MYDG+ +LI++
Sbjct: 83  QAVRQMYDGLKKLIEL 98


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical protein
            C27B7.7 protein.
          Length = 1471

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 345  LDVRIVGPGGPGADALVTALRHTLERPARGLAHRPMYTVFPKHIFYKEMENKD 503
            +++R++GPG P  + ++TA R+ +    +  +  P   +    ++Y E EN D
Sbjct: 960  VEIRVLGPGNPPENIILTAYRNQINVTWQE-STLPNGDIMKYIVYYSENENDD 1011


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 18   PDQLGDDRARVRAHQATEAGRRQCQAGGDRVEVPP 122
            P  +G  RAR  A  A  AG    Q  G+ ++ PP
Sbjct: 3159 PGAIGTVRARTNARAAANAGPSVGQNAGNAIQAPP 3193


>Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical
           protein W03G11.1b protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 430 RAGRSSVCRSAVTSASAPGPPG 365
           RA   + C   V SA  PGPPG
Sbjct: 77  RAAEGTCCSCGVGSAGPPGPPG 98


>Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical
           protein W03G11.1a protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 430 RAGRSSVCRSAVTSASAPGPPG 365
           RA   + C   V SA  PGPPG
Sbjct: 130 RAAEGTCCSCGVGSAGPPGPPG 151


>U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical
           protein C16A3.1b protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 403 SAVTSASAPGPPGPTI---LTSNRYSYEKTINNTKK 305
           ++ +SA+ P PP P I    + NR   + T+NN+ K
Sbjct: 37  ASTSSAAPPAPPKPVIPVMFSQNRQPMKPTMNNSTK 72


>U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical
           protein C16A3.1a protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 403 SAVTSASAPGPPGPTI---LTSNRYSYEKTINNTKK 305
           ++ +SA+ P PP P I    + NR   + T+NN+ K
Sbjct: 38  ASTSSAAPPAPPKPVIPVMFSQNRQPMKPTMNNSTK 73


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 37  TVRASVHIKLPKLAADNAKLEEIASKYHLQVRGTRGEHTEAEG 165
           T+ A  H  L  LA   AK+ E+ SKY++ +R        +EG
Sbjct: 862 TIPAQFHRGL--LAGRGAKIHELQSKYNVSIRFPNNREEGSEG 902


>AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D7.5 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = -3

Query: 479 ENMFRKNSVHWAVCEPARRTLERVPERRD*CVCPGTARPNNPHIQSILI*KNDK*YKKIL 300
           EN+ +    H+A  EP  R L+  PE           R  N    ++++ +ND+    +L
Sbjct: 23  ENILKFLDAHFAKEEPCARALKLSPETSRGIFTTTVTRCLNFPFSTVVLQENDEIAACLL 82

Query: 299 IARDRETT*RDFSILMSSAMPSYISLTASY 210
            +    T   D +   SS MP  + L   +
Sbjct: 83  ASVWNRTDPIDSADFNSSGMPENLKLFVQF 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,213
Number of Sequences: 27780
Number of extensions: 200241
Number of successful extensions: 849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)