Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K24
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.33
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 4.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 5.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.33
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Frame = -3
Query: 505 PPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSN 326
PP + T P T+TS T P A + TSS P S + S T N
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS-SPLPSTSTSCTTSTSIPPTGN 350
Query: 325 S----TPTGPKK*TRISMSP 278
S TPT P T + +P
Sbjct: 351 STTPVTPTVPPTSTSSTSTP 370
Score = 28.7 bits (61), Expect = 0.57
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Frame = -3
Query: 505 PPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKL--T 332
PP + T P T+TS T P A + TSS P +S T S + T
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS---SPLLSTSTSCTTSTSIPPT 402
Query: 331 SNS-TPTGPKK*TRISMSP*NQHRCT 257
NS TP P S +P CT
Sbjct: 403 GNSTTPVTPTVPPTSSSTPLTTTNCT 428
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 140 PRFLPA--LEARRTEVPECPPNIKTHRIQPEECGQEQKVH 27
PR LPA +E+ ++E P NI+ QP EQ H
Sbjct: 211 PRSLPADVIESAKSETPAMNTNIEQGVTQPSLVNTEQLSH 250
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 511 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALS 413
SGPP ++ ++AP TP + S A P+ A S
Sbjct: 60 SGPPPSYSNSAAP-ATPAASASSAAPAPAPAAS 91
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 383 EAAGQLARSGHEQRQVDEQQHADGPEEVDKN 291
E ++ GH Q Q +EQ +++ P E++KN
Sbjct: 425 EIITEVFEQGHSQNQTEEQGNSNAP-ELNKN 454
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 295 LSTSSGPSACCCSSTWRCSCP-LRAS*PA 378
L+ SSGP + S CSCP +++S P+
Sbjct: 300 LTVSSGPLSTASSIPSNCSCPSVKSSGPS 328
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 436 TRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTS-NSTPTGPKK*TRISMSP 278
++PSA S + TSS+ Q+P+ S ++ N+A + + N T + +S P
Sbjct: 112 SKPSAN-SSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQETAPPVSTVP 164
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 9.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -3
Query: 487 ITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDT----NSAKLTSNST 320
+ S P+ + + + A PSA +S +D + ++RP + T NS+ ++SN T
Sbjct: 5 VNSNPNASESISGNSAFNFPSAPVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYT 64
Query: 319 -PTGPKK 302
P G K
Sbjct: 65 FPHGSNK 71
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 463 PITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTP 317
P+T T L + S A + +T+ PQVS + + S T+ S P
Sbjct: 272 PVTKTPLEEANSSPAAQNQHITTVDHVHPQVS--MTPSLSTNNTATSVP 318
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 133 SCPRSRLVGRKSRNVHQILKHIVFSQKN 50
SC R V + RNV + ++ V+S+ N
Sbjct: 183 SCASPRSVNSRDRNVMAVARYSVYSKDN 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,823
Number of Sequences: 5004
Number of extensions: 25964
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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