Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K24
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1107 - 24024387-24024497,24025799-24026410 31 0.44
02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452 29 1.8
10_08_0950 + 21764902-21765912 29 3.1
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 3.1
09_02_0575 + 10845261-10847057 28 4.1
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 28 4.1
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 28 4.1
04_01_0607 + 7955026-7955664 28 4.1
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 4.1
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 4.1
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107... 28 5.4
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 28 5.4
03_06_0730 + 35775439-35775726,35777113-35778345 28 5.4
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 28 5.4
08_01_0434 + 3809681-3810016,3810039-3811100 27 7.1
07_03_0417 - 17970032-17970132,17970290-17970635 27 7.1
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 27 7.1
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 27 7.1
03_05_0349 + 23356871-23356907,23356995-23357063,23357236-233574... 27 9.4
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 27 9.4
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 505 PPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRP 377
PPA+ + T AP P TTT A + P AA T + + P
Sbjct: 36 PPASSKKTPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAEAP 78
>02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452
Length = 166
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 328 CSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGE 435
CS+ WR C L + AA+ + H + + WGE
Sbjct: 68 CSTRWRIMCKLTSKRFAATKDLISAMSHSKKQAWGE 103
>10_08_0950 + 21764902-21765912
Length = 336
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 511 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDT 350
S PP + S+P + P+ + A +AA+S S R+ P W +T
Sbjct: 5 SSPPPNPDALSSPDLPPLAAPAAAAAAAAAAVSSGGAGGSGRRLPPPCWTHEET 58
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -3
Query: 514 YSGPPAAHEITSAPHVT--PITTT---SLAQTRPSAALSDVDLTSSRRQRPQVSWRV 359
Y GPPAA + + AP P T L+ AL+D+DL + RQ P V V
Sbjct: 178 YQGPPAAEKPSGAPPAATPPARNTGRLGLSDREADDALNDIDLAMA-RQLPVVDTTV 233
>09_02_0575 + 10845261-10847057
Length = 598
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 280 GTWRFLSTSSGPSACCCSSTWR 345
G W S+S PS+C SS+WR
Sbjct: 69 GGWSSGSSSPAPSSCSSSSSWR 90
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 127 PRSRLVGRKS--RNVHQILKHIVFSQKNADRNRKC 29
P R VG + R+V ++L H+V+ K A R+R+C
Sbjct: 472 PAQRNVGDEQLKRHVLRLLPHLVYYNKQAVRSRRC 506
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 328 CSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGE 435
C + R + A+ P A+ A S QRGR WG+
Sbjct: 147 CGAASRRAAEAEAAYPRAAAAAAAESGLQRGRGWGD 182
>04_01_0607 + 7955026-7955664
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 376 AASGGATRSSRHQRGRRWGESAPSWW 453
AA RS R RGRRWG WW
Sbjct: 184 AARRAVERSRRRWRGRRWG-GRRRWW 208
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 376 AASGGATRSSRHQRGRRWGESAPSWWW 456
A GG R R G R G WWW
Sbjct: 20 AGGGGGGRGGRGGGGGRGGSGRLGWWW 46
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 291 ILVYFFGPVGVLLLVNLALFVSTTRQLTCG 380
+LV FG +++ V+LALF TRQL G
Sbjct: 950 LLVMVFGVFALIVYVSLALFDHQTRQLFVG 979
>08_01_0136 -
1077800-1077811,1077929-1078046,1079410-1079549,
1079627-1080313
Length = 318
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 286 WRFLSTSSGPSACCCSSTWRCSCPLRAS*PAASGGATRSS 405
W + S+SS + ++T SC AS A+SGGA S
Sbjct: 146 WVYCSSSSPSATTTTTTTTSSSCSSAASTGASSGGAAARS 185
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 407 RLDLVAPPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVK 273
R+ + EAAG++ + E+ + + + +G EE VP K
Sbjct: 88 RIRRLMETEAAGEVGEAAAEEEEEEHEAETEGEEEAAAEEQVPAK 132
>03_06_0730 + 35775439-35775726,35777113-35778345
Length = 506
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 292 FLSTSSGPSACCCSSTWRCSCPL 360
+++TSSG SA C +ST + CP+
Sbjct: 333 YVATSSGLSAICSTSTPQIQCPV 355
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 378 GLWRRDEVKSTSERAALGRVCAKLVVVMGVTWGADVISWAAGGPEYVWYAT 530
G W+ EVK + + K V V G + I WAA G EYV +T
Sbjct: 59 GQWKHHEVKVKDSKTLI--FGTKEVAVFGCR-NPEEIPWAAAGAEYVVEST 106
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 343 RCSCPLRAS*PAASGGATRSSRHQRGRRWGESAP 444
R C L A PA+SGG R +R R G S P
Sbjct: 47 RLPCSLPALPPASSGGGEAGERGRRRGRLGFSPP 80
>07_03_0417 - 17970032-17970132,17970290-17970635
Length = 148
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 421 RRWGESAPSWWW*WV*RGART*SRGRPEDPSTCG 522
RR G+ SW W RG R RGR CG
Sbjct: 62 RRAGQRQSSWLRQWQRRGQRRHCRGRERHARKCG 95
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 179 RSAPCVHDVHAQPPRFLPALEARRTEVPE 93
RS P VHD H FL L + RT PE
Sbjct: 12 RSMPAVHDAHDDSENFLELLNS-RTLAPE 39
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 389 PPEAAGQLARSGHEQRQVDEQQHADGPEEVD 297
PPEA +L +Q DE+ HAD E+D
Sbjct: 397 PPEA--ELPEQDEDQEDPDERHHADSDVEMD 425
>03_05_0349 +
23356871-23356907,23356995-23357063,23357236-23357424,
23358148-23358249,23358451-23358582,23359499-23359638,
23360169-23360252,23360608-23360748,23361815-23361916,
23362239-23362409,23362452-23362571
Length = 428
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 311 PEEVDKNLHVPVKPAPLH 258
PEE+D N H+PV P++
Sbjct: 286 PEEIDANHHIPVNDKPVN 303
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 475 PHVTPITTTSLAQTRPSA-ALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPT 314
P +TP TTT+ A RP + D+ LT S P + D AK + ST T
Sbjct: 409 PRMTPTTTTTPAGKRPPEWSPPDLQLTLS----PTTAPAAADGGGAKRSKTSTTT 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,035
Number of Sequences: 37544
Number of extensions: 239892
Number of successful extensions: 1049
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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