Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K24
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr...    28   3.6  
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik...    28   3.6  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   4.8  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   8.4  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    27   8.4  

>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
 Frame = -3

Query: 496  AHEITSAPHVTPITTTSLAQTRPSAALS----DVDLTS-----SRRQRPQVSWRVVDTNS 344
            +H  T  P  TP+ T S +Q+ PSA L+    ++  TS     S  QRP          S
Sbjct: 906  SHTTTVEPS-TPLETASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATS 964

Query: 343  AKLTSNSTPTGPKK*TRISMSP 278
               ++ ST T P   T  ++ P
Sbjct: 965  TSSSTESTTTSPTTSTTTTLPP 986


>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 484 TSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPTG 311
           T+    TP+ TT++  TRP+        T ++    Q    VV T + +   N T TG
Sbjct: 477 TTTTTQTPLPTTTILTTRPALTTQSTVFT-TQAVTTQQQTTVVKTPTTQTPQNQTTTG 533


>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
           protein F48F7.1 protein.
          Length = 1002

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 389 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 267
           PP+A+G +A   H   Q   +    G  EV    H  V+P+
Sbjct: 311 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 351


>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
           protein F48F7.1 protein.
          Length = 1002

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 389 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 267
           PP+A+G +A   H   Q   +    G  EV    H  V+P+
Sbjct: 311 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 351


>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
           protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 389 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 267
           PP+A+G +A   H   Q   +    G  EV    H  V+P+
Sbjct: 319 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 359


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 298 STSSGPSACCCSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGESAPS 447
           STSSGPS    S+    S P   S P+ + G + +S   +    G S  S
Sbjct: 558 STSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTSGSTKSTTSGPSTTS 607


>AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical
           protein Y54G11A.1 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = -2

Query: 182 QRSAPCVHD---VHAQP----PRFLPALEARRTEVPECPPNIKTHRIQPEECG 45
           Q   P ++D   VHA+P       LP L      VP   PN K   ++P E G
Sbjct: 386 QNGKPMINDSAQVHARPILNMAAKLPELPVEYPSVPRAQPNEKLEFVEPPELG 438


>AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical
           protein Y45F10D.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = -3

Query: 511 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLT 332
           S PPA+   +SA  +TP    + A T P    S   +    RQ+ Q       T S   T
Sbjct: 79  STPPASSASSSASSMTPTGNGAQASTIPMNQGSSTSMPV--RQKRQAVSTTTTTASPMST 136

Query: 331 SNSTPT 314
           S+ TP+
Sbjct: 137 SSPTPS 142


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -3

Query: 520 HTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSA 341
           H  + PPAA   T  P  TP TTT+   T  + AL     T +       +     T + 
Sbjct: 272 HYETVPPAAQT-TPQPPCTPRTTTTTTTTTTTTALPPCVYTPAPPATAPPATATPATQTP 330

Query: 340 KLTSNSTP---TGPKK*TRISMSP 278
           +  S +TP   T P++ T +   P
Sbjct: 331 RTYSTTTPIKTTVPQQWTTLPPGP 354


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 18  AVCMHF-LFLSAFFWLNTMCFNIW 86
           A+  +F LF+++ FW+NT  FNIW
Sbjct: 127 AIVTYFPLFINSSFWINT--FNIW 148


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 487  ITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPTGP 308
            I+  P  +PI +T+ A +   + +SDV   S+    P  S       S+  + +ST  G 
Sbjct: 1347 ISPVPTSSPIPSTTFASSTSGSTISDVSSVSTTSLAPLSSSLPSTVPSSTQSFSSTSEGS 1406

Query: 307  KK 302
             K
Sbjct: 1407 SK 1408


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 60  LNTMCFNIWWTFRDFRPTSLERGQEAWRL 146
           +N+   N WWT    + TSL    EAW L
Sbjct: 97  INSTAINNWWTSDVTKMTSLGSPLEAWPL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,922
Number of Sequences: 27780
Number of extensions: 168884
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)