Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K23
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    30   0.14 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   1.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   2.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   2.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   5.2  

>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  RHLSPNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
           R  +P ++  RKNG   EK+ +  V ++    +   WK S
Sbjct: 2   RKFTPKFVPRRKNGPVEEKDVDERVKIEFDVESQKKWKAS 41


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 4   RGRPRHLSPNYISSRKNGTAP 66
           RGRPR + P   SS +NG +P
Sbjct: 204 RGRPRKIKPEEGSSSQNGLSP 224


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 87  CPLFLFFWCCSVFSRTYVIWRQVTGS 10
           C  F+F+ CC VF  +Y I+  V  S
Sbjct: 216 CDSFVFYSCCIVFISSYSIFLSVKES 241


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = -3

Query: 171 RVILIFFSSMSVTSFPSPVCSFSMV*NYCPLFLFFWCCSVFSRTYVIWRQVTGS 10
           ++++   + ++V+S  S V S  +V     ++ F W       T++ W + T +
Sbjct: 161 KLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNA 214


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 67   EKEKERAVVLDHRKRANGTWKRSHAHRGEENQDHAI 174
            EKEKE+  + D  K   G+      H  +   DH +
Sbjct: 1416 EKEKEKESIEDEEKNREGSMSPVAKHASDVEDDHDV 1451


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 84  PLFLFFWCCS 55
           PL  FFWCCS
Sbjct: 434 PLETFFWCCS 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,857
Number of Sequences: 5004
Number of extensions: 18578
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)