Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K23
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622     32   0.23 
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412...    28   2.9  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    28   3.8  
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059...    27   8.8  
01_06_0143 - 26916490-26917719                                         27   8.8  

>03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622
          Length = 136

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 47  EKTEQHQKKRKRGQ*F*TIEKEQTGLGKEVTLIEEKKIRITR 172
           E+ E+ + KR+RG+   T+E    G GKEV L + +++R  R
Sbjct: 74  ERQEKKKSKRERGEEV-TMELRMVGFGKEVVLKQRRRMRRRR 114


>05_01_0494 -
           4120996-4121011,4121152-4121483,4122560-4122706,
           4122818-4122871,4123203-4123367,4125516-4125827,
           4125992-4126078,4126202-4126411
          Length = 440

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 13  PRHLSPNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRSHAHRG 150
           P HL P +   R  G  PE+          R+R     +RSHAH G
Sbjct: 81  PSHLQPAFEHPRLRGQKPEEPPSARPTETTRRRRRR--RRSHAHGG 124


>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 7   GRPRHLSPNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRSHAHRGEENQD 165
           G+P  +S +   +  NG+A +K+KE     D+ K      + +     +E +D
Sbjct: 173 GKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEKEDKEEETEKDNEKEKED 225


>01_06_0943 +
           33204112-33204136,33204703-33205743,33205786-33205926,
           33206205-33206245,33208250-33208346,33208599-33208836,
           33208937-33209087,33209155-33209454
          Length = 677

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  RPRHLSPNYISSRKNGTAPEKEKERAVVLDHRKR 111
           R  +L    + SR      +KEK R+VVLD RKR
Sbjct: 428 RETYLIGRILLSRGLQQIRDKEKSRSVVLDWRKR 461


>01_06_0143 - 26916490-26917719
          Length = 409

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 216 LIFA*IFSVPPSTPYRVILIFFSSMSVTSFPSP 118
           LI   +FS PP++PY +     SS S  +F  P
Sbjct: 151 LIRTVVFSCPPTSPYCIAAAHVSSASNIAFCQP 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,441
Number of Sequences: 37544
Number of extensions: 122515
Number of successful extensions: 263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)