Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K23
         (440 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF036494-1|ABO65080.1|  177|Homo sapiens SEC13-like 1 isoform pr...    29   9.4  
BC091506-1|AAH91506.1|  322|Homo sapiens SEC13 homolog (S. cerev...    29   9.4  
BC006167-1|AAH06167.1|  264|Homo sapiens SEC13 protein protein.        29   9.4  
BC002634-1|AAH02634.2|  325|Homo sapiens SEC13 homolog (S. cerev...    29   9.4  
AK223019-1|BAD96739.1|  322|Homo sapiens SEC13-like 1 isoform b ...    29   9.4  
AB209554-1|BAD92791.1|  303|Homo sapiens SEC13-like 1 isoform b ...    29   9.4  

>EF036494-1|ABO65080.1|  177|Homo sapiens SEC13-like 1 isoform
           protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 87  REENGTWEKSHEHAGHDSSVNSV 109


>BC091506-1|AAH91506.1|  322|Homo sapiens SEC13 homolog (S.
           cerevisiae) protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 87  REENGTWEKSHEHAGHDSSVNSV 109


>BC006167-1|AAH06167.1|  264|Homo sapiens SEC13 protein protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 29  REENGTWEKSHEHAGHDSSVNSV 51


>BC002634-1|AAH02634.2|  325|Homo sapiens SEC13 homolog (S.
           cerevisiae) protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 90  REENGTWEKSHEHAGHDSSVNSV 112


>AK223019-1|BAD96739.1|  322|Homo sapiens SEC13-like 1 isoform b
           variant protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 87  REENGTWEKSHEHAGHDSSVNSV 109


>AB209554-1|BAD92791.1|  303|Homo sapiens SEC13-like 1 isoform b
           variant protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 KRANGTWKRSHAHRGEENQDHAI 174
           +  NGTW++SH H G ++  +++
Sbjct: 81  REENGTWEKSHEHAGHDSSVNSV 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,282,761
Number of Sequences: 237096
Number of extensions: 621831
Number of successful extensions: 1170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)