Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K23
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 31 0.49
U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 28 2.6
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 28 2.6
AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical ... 28 2.6
AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 27 6.0
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 27 8.0
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 27 8.0
AC024804-6|AAF60746.1| 162|Caenorhabditis elegans Hypothetical ... 27 8.0
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 219 YLIFA*IFSVPPSTPYRVILIFFSSMSVTSFPSPV-CSFSMV*NYC 85
YLI + + S PY+++LI+ + VT PSP+ F YC
Sbjct: 5 YLIMLILIFLETSIPYKMVLIYGTPEDVTMNPSPLTMDFDACVEYC 50
>U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical
protein F10G2.3 protein.
Length = 417
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -3
Query: 168 VILIFFSSMSVTSFPSPVCS--FSMV*NYC 85
V+ FF+S SVTS PVC+ F+++ N C
Sbjct: 7 VLFYFFNSYSVTSSKVPVCTNEFTLINNKC 36
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 52 NGTAPEKEKERAVVLDHRKRANGTWKRSHAHRGEENQDHAI 174
N +AP+K E A +L ++ R +H H+G +N H++
Sbjct: 375 NQSAPQKNSESAYILFYQARDYAADDPNHNHKG-KNSTHSV 414
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 52 NGTAPEKEKERAVVLDHRKRANGTWKRSHAHRGEENQDHAI 174
N +AP+K E A +L ++ R +H H+G +N H++
Sbjct: 387 NQSAPQKNSESAYILFYQARDYAADDPNHNHKG-KNSTHSV 426
>AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical
protein Y51H4A.4 protein.
Length = 185
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 46 RKNGTAPEKEKERAVVLDHRKRANGTWKRSHAHRGEENQDHAI 174
+K PE +K+ A LD R+R N ++S R + +QD+++
Sbjct: 92 KKPVPVPENQKDEAY-LDRRRRNNEAARKSRESRKKVDQDNSV 133
>AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical
protein C16A11.5 protein.
Length = 643
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 32 IT*VREKTEQHQKKRKRGQ*F*TIEKEQTGLGKEVTLIEEKKIRITR*GVEGGTEKIYAK 211
+T +++ TE+ +++R++ Q T E+T + E EE+ + +T+ E EKI K
Sbjct: 563 LTILQQYTEELEQERQKYQEMLTARSEETSVQAEPAGGEEEMLDVTKQIEEAKEEKIRLK 622
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical protein
K12F2.2a protein.
Length = 1066
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 28 PNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
P SS + +AP + E VV K ANGT RS
Sbjct: 911 PGTSSSGRGSSAPGSDFETPVVSTTEKSANGTIPRS 946
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical protein
K12F2.2a protein.
Length = 1066
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 28 PNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
P SS + +AP + E VV K ANGT RS
Sbjct: 911 PGTSSSGRGSSAPGSDFETPVVSTTEKSANGTIPRS 946
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 28 PNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
P SS + +AP + E VV K ANGT RS
Sbjct: 427 PGTSSSGRGSSAPGSDFETPVVSTTEKSANGTIPRS 462
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 28 PNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
P SS + +AP + E VV K ANGT RS
Sbjct: 427 PGTSSSGRGSSAPGSDFETPVVSTTEKSANGTIPRS 462
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 28 PNYISSRKNGTAPEKEKERAVVLDHRKRANGTWKRS 135
P SS + +AP + E VV K ANGT RS
Sbjct: 911 PGTSSSGRGSSAPGSDFETPVVSTTEKSANGTIPRS 946
>AC024804-6|AAF60746.1| 162|Caenorhabditis elegans Hypothetical
protein Y51H7BR.3 protein.
Length = 162
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 267 PISLCLSTVTSIYWISYLIFA*IFSVPPSTPYRVILIFFSSM 142
PI L L T+T ++W IFA IF + Y I+F+S+
Sbjct: 77 PILLLLLTIT-LFWFISSIFALIFVLQDLKRYLRFHIYFNSV 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,577,481
Number of Sequences: 27780
Number of extensions: 108523
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -