Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K22
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    29   0.46 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    28   0.60 
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   7.4  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   7.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   9.8  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 152 VSVNNQCIKPQEEFNCTAGECLSLGVAIWNHLTRPLHKLCLSVQFYQ 292
           +  NNQ I PQ      A + + +   I+N L    HK C+S ++Y+
Sbjct: 6   IGKNNQTINPQNI--AMAEQEVEMMSDIFNRLVMTCHKKCISPKYYE 50


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 330 IELPPLEIIKWCRLNYRNRRKLYHECTVVFLTPGEYSI 443
           I++ P E  K  +L  RN R L+H C +V     EY++
Sbjct: 258 IDMTPGEATKLYQLVARNMRILFHVCHLVHADLSEYNL 295


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 333 ELPPLEIIKWCR 368
           EL P +I+KWCR
Sbjct: 31  ELSPQDILKWCR 42


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 176 LYIDYSHLPSHFKGDILTISII 111
           +Y+DY HL S+   D+L ++I+
Sbjct: 118 VYVDYKHLTSY--NDVLALAIV 137


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 185 LGVLYIDYSHLPSHFKGDILTISIIVCDRVIP 90
           L  ++ +   +P+ F G++LTI     D+++P
Sbjct: 396 LPTVHYNMGGIPTRFTGEVLTIDENGKDKIVP 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,631
Number of Sequences: 5004
Number of extensions: 39676
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)