Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K22
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 2.4
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 28 3.2
03_02_0707 + 10569261-10571276 28 3.2
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 28 3.2
10_08_0339 + 16922509-16923876,16923941-16924384,16924469-169246... 28 4.2
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 27 5.6
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 27 7.3
11_06_0511 - 24434007-24436814 27 7.3
11_06_0463 + 23879587-23879771,23879783-23881658 27 7.3
04_03_0643 + 18328807-18331969,18332560-18332627 27 7.3
02_05_0334 + 28013726-28013880,28014430-28014528,28014875-280152... 27 7.3
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 27 9.7
07_03_0382 + 17470508-17470807,17471449-17474517 27 9.7
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 182 GVLYIDYSHLPSHFKGDILTISIIVCDRVIPLTD 81
G LY+ Y LP H K L++S+ D + + D
Sbjct: 528 GALYMSYEDLPPHLKQCFLSLSLFPADYDLAIWD 561
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 357 KWCRLNYRNRRKLYHECTV 413
+WCR N+ N R L H C V
Sbjct: 573 RWCRENFINYRSLRHACDV 591
>03_02_0707 + 10569261-10571276
Length = 671
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 258 CTNCACPCNSTRITTTVCSATNLTIELPP 344
C CAC C S + T CS T ++ LPP
Sbjct: 449 CNTCACGCPSNQRGPT-CSTTAQSMLLPP 476
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 28.3 bits (60), Expect = 3.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 273 CPCNSTRITTTVCSATNLTIELPP 344
CPC+ + + C+ T+L ++PP
Sbjct: 724 CPCSDLGLLSPACTVTSLFFQIPP 747
>10_08_0339 +
16922509-16923876,16923941-16924384,16924469-16924655,
16924750-16925702
Length = 983
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 245 LTRPLHKLCLSVQFYQDY 298
+TRP+H +CL+ F+Q Y
Sbjct: 320 VTRPVHNVCLAWAFFQQY 337
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 215 DIHPPYN*IPLGVLYIDYSHLPSHFKGDILTISIIVCDRV 96
+IHP + ++ + Y+HLP H K +L +SI D V
Sbjct: 415 EIHPTLEGMKQ-IIALSYNHLPHHLKACMLYLSIFPEDYV 453
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 179 VLYIDYSHLPSHFKGDILTISIIVCDRVI 93
+L + Y+HLP H K ++ +SI D +I
Sbjct: 489 ILTLSYNHLPHHLKACMMYLSIFPEDYMI 517
>11_06_0511 - 24434007-24436814
Length = 935
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = -3
Query: 299 CN--PGRIARTGTVCATVWLNDSIWQHRARDIHP------PYN*IPLGVLYIDYSHLPSH 144
CN P I G + ++ +S+W A+ I N + VLY+ Y +LP H
Sbjct: 410 CNFLPQAIVSIGALLSSKQKTESVWSEMAQQIEDIQKSKSSLNNVQK-VLYLSYKNLPMH 468
Query: 143 FKGDILTIS 117
K +L S
Sbjct: 469 LKNCLLYCS 477
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 130 MSPLKWEGKCE*SMYKTPRGIQLYGG 207
++P KW +C+ + Y P + YGG
Sbjct: 51 LTPCKWTDRCDCTSYLEPVASRTYGG 76
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 173 YIDYSHLPSHFKGDILTISIIVCDRVIPLTDALPDISECHRDAIAD 36
YID SHL S K L++ ++ C +I + A+ +SE + I D
Sbjct: 995 YIDNSHLASAMKLKGLSLQLMRCPDLISIVGAI-SVSEIVQGRIED 1039
>02_05_0334 +
28013726-28013880,28014430-28014528,28014875-28015250,
28015558-28015692,28016466-28016612,28016713-28016817
Length = 338
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 315 ATNLTIELPPLEIIKWCRLNYRNRRKLYHEC 407
A+NL +EL P E+I + +++KL EC
Sbjct: 207 ASNLLLELDPEEVISRGQATLSHKQKLIDEC 237
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 401 VIQLSSIPVIQSTPLYYFQRWQLYCQVCS*AHRCCNPGRIARTGTVCATVWLN 243
++ S PV+QS ++ ++LY Q+ GRI+R T C + L+
Sbjct: 454 LLDTSEGPVLQSYDRHWSSLYELYSQIL--VSTIDPSGRISRESTACLALMLS 504
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 182 GVLYIDYSHLPSHFKGDILTISI 114
G +Y+ Y LPSH K +L +S+
Sbjct: 405 GAIYLGYHDLPSHLKQCLLYLSL 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,555
Number of Sequences: 37544
Number of extensions: 264708
Number of successful extensions: 662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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