Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K22
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical...    30   0.70 
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    24   3.3  
Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   4.9  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   4.9  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.4 protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 113 IVCDRVIPLTDALPDISECHRDAIADRCC*LYAQNPR 3
           +V ++ IPL  +   I   H D I++ CC LY + PR
Sbjct: 203 LVFEKFIPLVHSFNGIRN-HLDKISNHCCPLYGEAPR 238


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 249 PDRCTNCACPCNSTRITTTVCSATNLT-IELPP 344
           P   T+C+   +S+  T+T CS ++L+   LPP
Sbjct: 73  PSLLTSCSSFYSSSPSTSTYCSLSSLSPSSLPP 105



 Score = 22.6 bits (46), Expect(2) = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 354 IKWCRLNYRNRRKLYH 401
           I WC    R RRK +H
Sbjct: 132 ITWCAFPVRARRKAHH 147


>Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical
           protein D1086.6 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 249 PDRCTNCACPCNSTRITTTVCSATNLT-IELPPLEIIKWC 365
           P   T    P  +T  T+T  +A   T I  PP  + KWC
Sbjct: 169 PTTSTTPTTPTTTTPTTSTTTTARGTTDIPAPPSVVEKWC 208


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 459 WNTVCRLSTRRALGTQPCI 403
           W  VC+L T R LG+  CI
Sbjct: 250 WRCVCKLGTFRPLGSDKCI 268


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 459 WNTVCRLSTRRALGTQPCI 403
           W  VC+L T R LG+  CI
Sbjct: 250 WRCVCKLGTFRPLGSDKCI 268


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 459 WNTVCRLSTRRALGTQPCI 403
           W  VC+L T R LG+  CI
Sbjct: 250 WRCVCKLGTFRPLGSDKCI 268


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 188  EFNCTAGEC----LSLGVAIWNHLTRP 256
            E+NCT G C    LS+   +WN+++ P
Sbjct: 928  EYNCTYGPCWEPCLSMISLVWNNISAP 954


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,836
Number of Sequences: 27780
Number of extensions: 236319
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)