Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K21
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   2.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    24   3.8  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   3.8  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   3.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   8.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    23   8.8  

>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 217 LRSYTCPETKLSL*THIQSSLLRNNGHLRKR*TEPGHKLHANVI 86
           L +  CP+ K  +   +Q SLL+    L++  T   + LH N I
Sbjct: 92  LNNLNCPDIKRYILESLQDSLLKEISSLKE--TSTQNHLHCNDI 133


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 199 PETKLSL*THIQSSLLRNNGHL 134
           PETK S    +QS L+R NG L
Sbjct: 158 PETKKSKIKALQSQLVRVNGEL 179


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 5   EGTFDVFAVITLNFHSITQFRLGTMTENHIRM 100
           +G +D   +IT  ++ I+  RLG  T+N + M
Sbjct: 283 DGVYDT--IITKLYNRISTMRLGMYTQNDVDM 312


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 13  FRRVRCNNIKFPFNYTIPPWDNDRKSHSHVACVLALSSVYAGD 141
           FR    N+  FP N T+  + +  +SH H   VL   ++YA +
Sbjct: 380 FRTFTVNSTAFPPNQTLDFFRSLDESHQHYVPVLD-PAIYAAN 421


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 135 CVNARQSQDTSYMRM*FSVIVPRRNCVIEW 46
           C+ A  + + SY+ +   V VPR+   + W
Sbjct: 12  CIKAPSNWEKSYLEVWPLVTVPRQCICLRW 41


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 141 VTCVNARQSQDTSYMRM*FSVIVPRRNCVIEWKFNVI 31
           V  +N  QS D++     ++V   + NC+  WK+  +
Sbjct: 772 VLWINTVQS-DSTIKAFTYNVDTKQLNCIKSWKYKTV 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,279
Number of Sequences: 5004
Number of extensions: 18958
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)