Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K21
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   1.2  
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733...    26   3.6  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    26   3.6  
12_01_0134 + 1017278-1018540,1018626-1019882                           26   4.8  
11_01_0131 + 1086916-1088127,1088213-1089469                           26   4.8  
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    26   4.8  
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496     25   6.3  

>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 148 NNGHLRKR*TEPGHKLHANVIFCH-CPKAELCN 53
           ++G  RKR T PG  LH + +     PK +LCN
Sbjct: 332 DSGASRKRKTAPGLHLHGSAVAKRKIPKLQLCN 364


>12_02_1271 +
           27472457-27473030,27473122-27473197,27473277-27473392,
           27473840-27474354
          Length = 426

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +1

Query: 7   GHFRRVRCNNIKFPFNYTIP------PWDNDRKSHSHVACVLALSSVYAGD 141
           G+F  V CN  +F  N T+        WDN  K H H   +  L  + A D
Sbjct: 294 GYFHTVVCNAEEFK-NTTVNHDLHYISWDNPPKQHPHYLTIEDLDRMVASD 343


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 218 IAQLHLPRDKVVIVDTHSVVTPS 150
           IA+LH   D V ++D  S VTPS
Sbjct: 88  IAELHWAADGVSVLDLTSAVTPS 110


>12_01_0134 + 1017278-1018540,1018626-1019882
          Length = 839

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 218 IAQLHLPRDKVVIVDTHSVVTPS*QRSP 135
           +A +H+PRD   ++    VVTPS  RSP
Sbjct: 476 LACVHVPRDVPALLTLLDVVTPS-SRSP 502


>11_01_0131 + 1086916-1088127,1088213-1089469
          Length = 822

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 218 IAQLHLPRDKVVIVDTHSVVTPS*QRSP 135
           +A +H+PRD   ++    VVTPS  RSP
Sbjct: 459 LACVHVPRDVPALLTLLDVVTPS-SRSP 485


>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -1

Query: 172 HIQSSLLRNNGHLRKR*TEPGHKLHANVIFCHCPKAELCN*MEI*CYYSEHVE 14
           H++S   +   HL     +  H+LH        P AE+C+   +  ++ +H +
Sbjct: 408 HLESEHAKPELHLEPE--QAKHELHTEQCVPAAPSAEICSNFGVPLFFRQHTD 458


>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
          Length = 321

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 7   GHFRRVRCNNIKFPFNYTIPPWDNDRKSHSHVACVLALSSVYAGDRCYEGVTTECVSTMT 186
           G F   R   +K   N+T  P+    +++++ AC +  +    G  C  G      S+ +
Sbjct: 206 GDFWATRGGQVKI--NWTAAPFVASYRTYAYSACAVPAAGGGGGGPCTSGQLPNSTSSPS 263

Query: 187 TLSLG 201
           T   G
Sbjct: 264 TCDCG 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,814
Number of Sequences: 37544
Number of extensions: 127936
Number of successful extensions: 273
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)