Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K19
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.40 
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    28   0.92 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   1.6  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   4.9  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    25   4.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   4.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   8.6  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 294 VYHVDSVLSNDKLYGSDEEFIDAIEKYATGVCQELLVVLKTLDGNKETQKQYNL 455
           +++  S+L    +Y  D+E ++A EK+ T   Q  L   K L+ NK   + Y+L
Sbjct: 630 LHNTSSLLPGLVIYEEDDEDVEAAEKFYTNDIQRDL-AKKALECNKLENRVYDL 682


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 255 VLDILNEMAQENYVYHVDSVLSNDKLYGSDEEFIDAIEK-YATGVCQELLVVLKTLDGNK 431
           V DILN  ++  +   V  +L + K+   ++EF D +++    G   E +V  K  D +K
Sbjct: 42  VADILNATSKSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGVGYGNEFIV--KPTDLDK 99

Query: 432 ETQKQYNLSME 464
           + +K + L ++
Sbjct: 100 DFEKNHFLDLK 110


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 225 EPLYYTTLLRVLDILNEMAQENYVYHVDSVLSND 326
           EP +Y   L++ DILN+ +    V H+D + S D
Sbjct: 163 EP-HYADKLQMSDILNDDSNPKLVVHLDRIRSQD 195


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/82 (21%), Positives = 39/82 (47%)
 Frame = +3

Query: 138 DNDNVDSNCKCYIMSGFIKTMERIHWDKTEPLYYTTLLRVLDILNEMAQENYVYHVDSVL 317
           D + ++   K  I+ G +  + R + D ++  + T +L    +L  +   N++ H D +L
Sbjct: 19  DAEEIEDEGKNIIL-GIVSQL-RPNMDLSKVTFPTFVLEPKSMLERIT--NFMSHPDLLL 74

Query: 318 SNDKLYGSDEEFIDAIEKYATG 383
           +  K    +  F+D +  Y +G
Sbjct: 75  NVQKTADPEMRFLDVVRFYMSG 96


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 NYVYHVDSVLSNDKLYGSDEEFIDAIEKYA 377
           NY + +     +D L  SDEE ID ++ YA
Sbjct: 244 NYTFSIIKEKVDDILTVSDEELIDCLKFYA 273


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 433 SLLPSNVFKTTNNS*HTPVAYFSIASINSSSDPYSLSLDNTEST 302
           S +P+    +++ +  TPV+  S ++ +S S   S ++D+T ST
Sbjct: 261 SSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPST 304


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 345 EEFIDAIEKYATGVCQELL---VVLKTLDGNKETQKQYNL 455
           E +ID++E+Y+  V Q+L    V  K    +K+ +++YNL
Sbjct: 523 EMYIDSLEQYSFEVLQQLSQLNVFTKASLEDKQKKEKYNL 562


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 452 FIYGVILARHTTWGP 496
           F++G+  ARH  WGP
Sbjct: 441 FMFGIGTARHWHWGP 455


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 249 LRVLDILNEMAQENYVYHVDSVLSNDKLYGSDEEFIDAI 365
           LR LD++NE+  +  +  +   L    +  SDE  ++ I
Sbjct: 345 LRALDLVNEIVNKENIRTIVKTLMLQLIVSSDESAVEDI 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,823
Number of Sequences: 5004
Number of extensions: 39371
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)