Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K19
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 29 2.8
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 29 2.8
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 28 3.7
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 28 3.7
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665... 28 3.7
05_06_0184 + 26198003-26198518 28 5.0
12_01_0862 + 8161117-8163913,8164000-8164019 27 8.7
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60... 27 8.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 8.7
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 294 VYHVDSVLSNDKLYGSDEEFIDAIEKYATGVC 389
V H+D VL KL S EF +E Y TG+C
Sbjct: 207 VVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLC 238
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 487 RRMTRQNNSIDKLYCFCVSLLPSNVFKT 404
R+ + +DK+YCFC L SN K+
Sbjct: 241 RKWLVYSKHVDKVYCFCCKLFKSNQSKS 268
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 153 DSNCKCYIMSGFIKTMERIHWDKTE-----PLYYTTLLRVLDILNEMAQENYVYHVDSV 314
DS K I+S I+ + + W + P+ T+ LRVLD++ ++A+ H D++
Sbjct: 1494 DSTKKDQILSQLIEALSKCSWLGSVKLCACPVVSTSYLRVLDLMLDVARTGKSGHTDAI 1552
>06_01_0263 +
1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 336 GSDEE--FIDAIEKYATGVCQELLVVL---KTLDGNKETQKQYNLSMEL 467
G+D E ID++ +A G ELL VL + L+G +Q+Q LS+ +
Sbjct: 476 GTDTETRLIDSLSLFAHGFISELLQVLMSLQLLEGGGSSQRQLTLSITM 524
>02_02_0088 -
6655493-6655601,6656057-6656259,6656382-6656594,
6656683-6656792,6656878-6656981,6657076-6657245,
6657337-6657501,6657584-6657702,6657853-6657940,
6658035-6658140,6658235-6658323,6658461-6658604,
6658715-6658807,6658906-6658972,6659116-6659228,
6659306-6659401,6659524-6659724
Length = 729
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +3
Query: 213 WDKTEPLYYTTLLRV--LDILNEMAQENYVY---HVDSVLSNDKLYGS 341
WDK++ L+YTT + + D+ + + + VY H V N K YGS
Sbjct: 473 WDKSDYLWYTTYVNIGTNDLRSGQSPQLTVYSAGHSMQVFVNGKSYGS 520
>05_06_0184 + 26198003-26198518
Length = 171
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 186 IHSLCNIYSYYRRYHCPMQLLSKAT---WPESRYKCALVRAQCREG 58
+ SLC+ + +RRYH P S ++ PE + ++ R Q R G
Sbjct: 10 VSSLCDAANDHRRYHLPHASSSPSSSRRTPECHFSASVHRHQIRPG 55
>12_01_0862 + 8161117-8163913,8164000-8164019
Length = 938
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 282 VPFHLKYLEHVIGSYSIKVLFCPNV 208
V H K++EHV GS ++KV P V
Sbjct: 889 VGMHQKFMEHVQGSSNVKVKHIPVV 913
>05_01_0091 +
602481-602721,602819-602901,603431-603560,604188-604267,
604353-604442,605019-605143,605702-605762,605839-605889,
605976-606053,606136-606241,606333-606478,607054-607176
Length = 437
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 153 DSNCKCYIMSGFIKTMERIHWDKTEPLYYTTLLRVLDI 266
DS KC GF +E I +T +Y ++R+ D+
Sbjct: 235 DSRVKCLADGGFFLDVEDISGQRTMRAFYNDVVRLQDL 272
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 267 LNEMAQENYVYHVDSVLSNDKLYGSDEEFIDAIEKYATGVCQELLVVLKTLDGNKET 437
LN+ EN + H DSV + KL DE + K + +L++V + ET
Sbjct: 1198 LNDKKDENTLEHTDSVGGDVKLLVKDESLVTLEAKASALEVMDLVLVSDVELSSNET 1254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,133
Number of Sequences: 37544
Number of extensions: 236268
Number of successful extensions: 577
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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