Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K18
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    33   0.015
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    29   0.25 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    28   0.58 
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    26   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   4.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   7.1  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   9.4  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 33.5 bits (73), Expect = 0.015
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +2

Query: 251 TCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTTIN 415
           T RQI +    +A  L K G++RGD V ++     + + A +G +  GAT + I+
Sbjct: 314 TYRQIDESSNILAHHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVID 368


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 178 YNERVADMINELEFLKQVRYTLHYSQ 101
           YNE + D++N+ E LK  ++ +H+ +
Sbjct: 623 YNETIYDLLNKAEMLKNPKHDIHHDE 648


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +1

Query: 28   ISNPYLFIFKRSKINKRQVTFTKMIVNNVVCTGPALKIPAHLSYLRHVRYRQTKGKLRKR 207
            + +PY+   + S      V FT +           L+IP+H S +R  + +QT+  + ++
Sbjct: 980  LGSPYVTRNEESASESSHVMFTLLTKRGNKQRSQYLEIPSHSSLVRSTKNQQTEEIMERK 1039

Query: 208  RL 213
            R+
Sbjct: 1040 RV 1041


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 178 YNERVADMINELEFLKQVRYTLHYSQ 101
           +N  +AD+ +EL+  +Q+ Y L Y+Q
Sbjct: 539 HNFEIADLRDELQDKEQIIYALRYAQ 564


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 402 SVAPQQIDPNAAGMNSSRFSQNRATVSPRFTPIFFKPLA 286
           S AP   +P+A+G+N+   S   + VSP   P F  P A
Sbjct: 140 SSAPASQEPSASGVNAPTVSAPNSMVSP--PPSFQPPSA 176


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  NKRQVTFTKMIVNNVVCTGPALKIPAHLSYLRHVRY 177
           N  +++FT  IV   VC   +L +    ++L H+R+
Sbjct: 580 NLAKLSFTSTIVTMSVCDEYSLVVYTADNFLHHIRF 615


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 348 FSQNRATVSPRFTPIFFKPLATFTIPCKI-CLHVVLRPSS 232
           F ++  + SP   P F+ P   F   CKI  +H + R  S
Sbjct: 32  FKEHLTSRSPYHKPYFYGPSIDFPTTCKIKQVHTLQRHGS 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,894
Number of Sequences: 5004
Number of extensions: 31605
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)