Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K18
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 43 1e-04
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 39 0.002
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 37 0.007
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 35 0.035
05_03_0481 + 14556223-14556762,14556848-14556928,14559532-145597... 34 0.046
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348... 33 0.080
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171... 32 0.19
10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978 31 0.32
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 31 0.32
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 31 0.43
11_01_0439 + 3353516-3353962,3354403-3354483,3354675-3354947,335... 30 0.99
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912... 30 0.99
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 29 1.3
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 29 1.3
08_01_0316 + 2802057-2802474,2802575-2802712,2802803-2802891,280... 27 7.0
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640... 27 7.0
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 221 LINGDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGAT 400
LI+G G T ++ A+GL+++GV +GD V N EF + LG+ GA
Sbjct: 44 LIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAA 103
Query: 401 LTTIN 415
TT N
Sbjct: 104 TTTAN 108
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 221 LINGDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGAT 400
LI+G G + ++ + A+GL+++GV +GD V N EF LG+ GA
Sbjct: 48 LIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAA 107
Query: 401 LTTIN 415
TT N
Sbjct: 108 TTTAN 112
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 215 VVLINGDDGRKTTCRQILQGIVNVASGLKK--IGVKRGDTVALFCENRDEFIPAALGSIC 388
V L++ GR+ T ++ + + AS L + +++G + N F AAL ++
Sbjct: 52 VALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMS 111
Query: 389 CGATLTTIN 415
GA LTT N
Sbjct: 112 LGAVLTTAN 120
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 34.7 bits (76), Expect = 0.035
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 251 TCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGA 397
T +Q+ Q I++ + GL+ IGV + +ALF +N ++ A G + GA
Sbjct: 131 TYKQLEQEILDFSQGLRAIGVAPDEKIALFADNSCRWLVADQGIMATGA 179
>05_03_0481 +
14556223-14556762,14556848-14556928,14559532-14559798,
14559933-14559992,14560811-14560942,14561026-14561199,
14562769-14562919,14563651-14563790,14565656-14565787,
14565866-14566000,14566098-14566304,14567376-14567540
Length = 727
Score = 34.3 bits (75), Expect = 0.046
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 281 NVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTTI 412
N +SGL K+G +R A+F + R E+I AA G T+ TI
Sbjct: 149 NFSSGLIKLGHQRDSRAAIFADTRTEWIIAAQGCFRQNLTVVTI 192
>12_01_0441 +
3484003-3484374,3485071-3485151,3485242-3485514,
3485695-3485826,3485903-3486076,3486164-3486393,
3486562-3486679,3486717-3486743,3486948-3487079,
3487189-3487323,3487393-3487599,3487772-3487936
Length = 681
Score = 33.5 bits (73), Expect = 0.080
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 260 QILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTTI 412
++ + + N ASGL ++G ++ D VA+F E R E+ A T+ TI
Sbjct: 86 EVFKSVCNFASGLIRLGHQKTDRVAIFAETRAEWQIALQACFRQNITVVTI 136
>08_01_0214 -
1710317-1710443,1710839-1711047,1711161-1711420,
1711442-1711534,1711745-1711872,1711958-1712151,
1712288-1712385,1712548-1712658,1712782-1712950,
1713109-1713181,1713311-1713507
Length = 552
Score = 32.3 bits (70), Expect = 0.19
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 218 VLINGDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGA 397
V ++G+ R+ T + G +A+ L +GV+RG VA+ N E+I L G
Sbjct: 24 VAVSGN--RRLTGAGLADGARRLAAALSNLGVRRGHVVAVVAFNSIEYIELFLAVTYIGG 81
Query: 398 TLTTIN 415
+ +N
Sbjct: 82 IIAPLN 87
>10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978
Length = 299
Score = 31.5 bits (68), Expect = 0.32
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 423 TQPLIVVSVAPQQIDPNAAGM-NSSRFSQNRATVSPRFTPIFFKPLATFTIPCKICL 256
+QP+ S+A QQ+ P AG N+ +A +SP TP P K+CL
Sbjct: 242 SQPIFDPSMAAQQVPPVGAGQPNAMAQPHAQAAISPFATPYVTSKNDPKIYPLKLCL 298
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 31.5 bits (68), Expect = 0.32
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +2
Query: 200 ENEDSVVLINGDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALG 379
E D+ LI GR T + A+ L ++GV GD V + +N EF A
Sbjct: 53 ELPDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFA 112
Query: 380 SICCGATLTTIN 415
+ GA T N
Sbjct: 113 ASFLGAVTTAAN 124
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 230 GDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTT 409
G DG K T ++L + +A+ LK +GV +GD V ++ E A L GA +
Sbjct: 155 GQDG-KLTYSELLDRVCQLANYLKSVGVGKGDAVIIYLPMLLELPIAMLACARIGAVHSV 213
Query: 410 I 412
+
Sbjct: 214 V 214
>11_01_0439 +
3353516-3353962,3354403-3354483,3354675-3354947,
3355081-3355212,3355303-3355476,3355568-3355702,
3355746-3355797,3355954-3356093,3356574-3356705,
3356787-3356921,3356995-3357201,3357779-3357943
Length = 690
Score = 29.9 bits (64), Expect = 0.99
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 275 IVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTTI 412
+ N +SGL +IG +R + VA+F + R E+ A T+ TI
Sbjct: 116 VCNFSSGLVRIGHQRDERVAIFADTRAEWQIALQACFRQSITVVTI 161
>06_03_0796 -
24690115-24690247,24690622-24690808,24691060-24691222,
24691503-24691688,24692005-24692174,24692648-24692774
Length = 321
Score = 29.9 bits (64), Expect = 0.99
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 149 IYHICDTFVIDKLRENCENEDSVVLINGDDGRKTTCRQILQGIVNV 286
I IC + VI L ++ N S VLIN G + T L+ +V+V
Sbjct: 186 IVTICPSLVIGPLMQSTVNASSKVLINYFKGDRDTVENRLRNVVDV 231
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 221 LINGDDGRKTTCRQILQGIVNVASGLKK--IGVKRGDTVALFCENRDEFIPAALGSICCG 394
LI+G G T + + +A+ L++ +G++RG V N EF+ + + G
Sbjct: 53 LIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSPEFVLSFFAASRVG 112
Query: 395 ATLTTIN 415
A +TT N
Sbjct: 113 AAVTTAN 119
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 230 GDDGRKTTCRQILQGIVNVASGLKKIGVKRGDTVALFCENRDEFIPAALGSICCGATLTT 409
G D K T ++L + +A+ LK +GV +GD V ++ E A L GA +
Sbjct: 305 GQDA-KLTYSELLNKVCQLANYLKSVGVGKGDAVVIYLPMLMELPIAMLACARIGAVHSV 363
Query: 410 I 412
+
Sbjct: 364 V 364
>08_01_0316 +
2802057-2802474,2802575-2802712,2802803-2802891,
2803711-2803980,2804063-2804193,2804364-2804481,
2804561-2804650,2804731-2804799,2804846-2804854,
2804903-2804980,2805249-2805303,2805810-2806003
Length = 552
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 275 IVNVASGLKKIGVKRGDTVALFCENRDEFIP 367
+V V S ++IG++RGD V +F +NR +P
Sbjct: 388 LVKVDSTAERIGIRRGD-VIVFKDNRCSTLP 417
>03_06_0177 +
32163393-32163443,32163711-32163803,32163875-32164071,
32164157-32164262,32164391-32164537,32164637-32164756
Length = 237
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 278 LSLVKSACTLFYVHHRH*SKQPSLRFRSFPL 186
L V CT +Y+HH SK+P+ + + L
Sbjct: 172 LGYVMYDCTHYYLHHGQPSKEPAKNLKRYHL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,597,568
Number of Sequences: 37544
Number of extensions: 195463
Number of successful extensions: 465
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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