Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K17
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 30 0.17
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 29 0.29
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 2.7
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 6.3
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 6.3
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 6.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 24 8.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 24 8.4
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 8.4
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.9 bits (64), Expect = 0.17
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 211 GIAIYGLNSPKDRNALGFELIDAMKEINKIIR-EDTKLSVVILHSMVQGIFCAGANLK-E 384
G I+ LN PK NA+ ++ID++ + K++ E++ L+ VI+ F +G ++K
Sbjct: 65 GARIFTLNRPKVLNAINVDMIDSI--LPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAA 122
Query: 385 RFTMNDNEVAE 417
++ D ++ E
Sbjct: 123 ALSIQDGKLPE 133
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 29.1 bits (62), Expect = 0.29
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 242 FGLLRPYIAMPLSTPVSLSNATGPTLSVCFGVANSRVFTNFSNPRNLF 99
FG L+P + + +STP N LS +SR TNF +P ++F
Sbjct: 132 FGNLKPNVCV-VSTPNFEFNTIFEKLSTLTSSISSRTSTNFRHPEHVF 178
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 249 SVFWAIKAVYSDASVHAGKPLERHGPYTFCMFRSC 145
SV W ++ S++ K LE+H C+ +C
Sbjct: 50 SVTWGTAGSTAEVSIYLAKMLEQHHKIPACLHLTC 84
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 270 HRRYERDKQNYKRRYKIICSYSSQ 341
H YE K +YK+R++I+ Q
Sbjct: 300 HNYYEEYKSSYKKRFEILAKAFDQ 323
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 6.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 187 ERLTGVDRGIAIYGLNSPKDRNALGFELIDAMKEINKIIRE 309
+R G D G+ + K+ +L FEL + K IN++ +E
Sbjct: 22 QRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQKE 62
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 6.3
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 265 ELIDAMKEINKIIREDTK 318
EL+D ++E+ ++IR+D+K
Sbjct: 425 ELMDKLEEVARVIRKDSK 442
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 206 STPVSLSNATGPTLS 162
+TP+SLSN+ P+LS
Sbjct: 264 TTPISLSNSIAPSLS 278
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 396 HGKSLLKICTCTEDSLHHTVKNN 328
H K L+++C C +D L +N
Sbjct: 718 HSKVLVEVCICLDDVLQRRYASN 740
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 119 SNPRNLFTFGINIFRQCFVNCNFN 48
S P N N+FR+ F CNF+
Sbjct: 248 SLPPNFINNHSNVFRRSFHTCNFS 271
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 163 ESVGPVAFERLTGVDRGIAIYGLNS 237
+SVG V FERL G+ +GIA+ + S
Sbjct: 1000 DSVGYVDFERLEGI-QGIALANIVS 1023
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,897
Number of Sequences: 5004
Number of extensions: 28996
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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