Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K17
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 64 4e-11
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 49 2e-06
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 30 0.66
05_07_0272 + 28850905-28851648 28 3.5
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 28 3.5
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168... 28 3.5
07_03_0820 - 21749477-21749866,21751192-21751590 27 6.1
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702... 27 8.1
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 64.1 bits (149), Expect = 4e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +1
Query: 175 PVAFERLTGVDRGIAIYGLNSPKDRNALGFELIDAMKEINKIIREDTKLSVVILHSMVQG 354
PV ++L+ D GI L P+ RNA+G E++ ++ + ++ D VV+L S V
Sbjct: 41 PVRLQKLSAPDSGIVEMRLERPEARNAIGREMLQGLRSAIEKVKADATAKVVLLASSVPK 100
Query: 355 IFCAGANLKERFTMNDNEVAE 417
+FCAGA+LKER M+ EV E
Sbjct: 101 VFCAGADLKERRLMSPCEVRE 121
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +1
Query: 175 PVAFERLTGVDRGIAIYGLNSPKDRNALGFELIDAMKEINKIIREDTKLSVVILHSMVQG 354
PV+ +L+ D I L P+ +NA+ +E + ++ + + + D + VV++ S V G
Sbjct: 34 PVSLHKLSAPDCEIVELRLERPEVKNAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPG 93
Query: 355 IFCAGANLK 381
+FCAGA+LK
Sbjct: 94 VFCAGADLK 102
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 30.3 bits (65), Expect = 0.66
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 202 VDRGIAIYGLNSPKDRNALGFELIDAMKEINKIIREDTKLSVVILHSMVQGIFCAGAN 375
V GIA +N P RNA + + + R+D+ + V+IL FC+G +
Sbjct: 77 VGEGIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGD 134
>05_07_0272 + 28850905-28851648
Length = 247
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 231 KAVYSDASVHAGKPLERHGPYTFCMFRSC 145
KA+ DA V KP E+HG + + R+C
Sbjct: 31 KAIDGDADVEIAKPAEQHGHGSRLLRRAC 59
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 268 LIDAMKEINKIIRE-DTKLSVVILHSMVQGIFCAG 369
L+ ++ ++ I+R + K V+L +G+FCAG
Sbjct: 18 LVSSLCQVEPILRNPERKRKAVVLDQQFKGVFCAG 52
>05_01_0227 -
1684597-1684727,1685003-1685100,1685176-1685270,
1685360-1685545,1686185-1686298,1686583-1686684,
1686811-1687096,1687242-1687291,1687351-1687479,
1687590-1687724,1688163-1688165
Length = 442
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 247 RNALGFE-LIDAMKEINKIIREDTKLSVVILHSMVQ 351
+NAL LID +K I REDT L+V IL ++ +
Sbjct: 347 KNALSAAFLIDIVKCTTSIFREDTMLAVSILENLAK 382
>07_03_0820 - 21749477-21749866,21751192-21751590
Length = 262
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -1
Query: 260 PKAFRSFGLLRPYIAMPLSTPVSLSNAT 177
P A RS LLR Y A+PLS+P S S++T
Sbjct: 8 PLARRSLLLLR-YKALPLSSPSSSSSST 34
>01_06_0782 +
31969677-31969767,31969863-31969960,31970059-31970235,
31970367-31970467,31970626-31970701,31970827-31970886,
31970979-31971215,31971612-31971686,31971981-31972039,
31972110-31972201,31972463-31972623,31972964-31973176
Length = 479
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 131 FTNFSNPRNLFTFGINIF 78
FTN ++ RNLF G++IF
Sbjct: 365 FTNMNSMRNLFIVGVSIF 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,895,210
Number of Sequences: 37544
Number of extensions: 170570
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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