Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K14
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...   144   5e-36
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    33   0.033
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    30   0.17 
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    29   0.30 
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    29   0.53 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   3.7  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   4.9  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   8.6  

>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 716

 Score =  144 bits (350), Expect = 5e-36
 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
 Frame = +2

Query: 29   CKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFA 208
            C    D L A  IR E D R  Y+PG+KF+HWE+KGVP+R+E GP D  K +V AV+R  
Sbjct: 524  CSKLADRLNAADIRTEADLRA-YTPGYKFSHWEMKGVPLRLEYGPNDAKKNQVTAVRRDT 582

Query: 209  GEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAP 388
             EK+ +  +     ++ LL +    M++ +  ERDAH+  V EW DF+  L  ++++  P
Sbjct: 583  FEKIPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVKEWADFVPALNKKNIVMIP 642

Query: 389  FCGEIPCEDSIKNDSAR-TEDDPTTDVKGPAMGAKSLCIP 505
            +C    CE  IK +SAR    D   D K P+MGAKSLCIP
Sbjct: 643  WCNTTECEKEIKKNSARQVNGDEPEDEKAPSMGAKSLCIP 682


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 32.7 bits (71), Expect = 0.033
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 227 KRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLL 379
           K    VN+  +LL RT+D +     KERD  L  + EW+    R+E + LL
Sbjct: 652 KLQEKVNEHESLLSRTND-ILSTLRKERDEKLIPIHEWQQLQERIEHQTLL 701


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 86  RDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGEKMTLKRDA 238
           R N + G+K    EL G P  I +G +   +G    + R +GE+  L +D+
Sbjct: 365 RQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDS 415


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 282 RCFRSQQKNAMRIYRMSLS--GKISSHV*RQGIFCSRRSAGKYHAR 413
           RC R   +  +  Y++ LS  G+ +SH+ R+G     RSAG  + R
Sbjct: 855 RCMRRYDRIRLNSYKLLLSSKGRSASHISRRGAASILRSAGYNYGR 900


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 50  LVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEV----VAVQRFAGEK 217
           L A GI+AE  Y+    P  +F+  +   VP  + +G  + AKG V    + ++  + E 
Sbjct: 460 LWANGIKAEFLYKVKPKPRQQFDAADKFDVPFAVILGQDEFAKGSVRIKQMGLKENSDEG 519

Query: 218 MTLKRDAAVNDITALLE 268
             + R+  V+ +  LL+
Sbjct: 520 QLVPREEMVSVLKKLLK 536


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 266 ERTHDQMFQKSTKERDAHLSHVTEWKDFIARL 361
           +  H+ +  KST+  D H  H + W +F+  L
Sbjct: 302 QNVHEYLRAKSTETEDVHPFHDSIWLNFLVVL 333


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 137 VPVRIEIGPKDMAKGEVVAVQRFAGEKMTLKRD-AAVNDI 253
           V VR    PK  +KG  VAV+    + + LK   + +ND+
Sbjct: 664 VNVRNRDDPKKQSKGSTVAVEEVVKKLLKLKESKSLINDL 703


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 177  RAKSSQCKGLRARK*R*NETRPSTTLPHY 263
            RA+ ++C GL ARK   +ET  S+    Y
Sbjct: 1208 RARLAECLGLDARKYYSHETSESSAFQRY 1236


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 22/90 (24%), Positives = 34/90 (37%)
 Frame = +2

Query: 233  DAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCE 412
            D  +N I        +   QKS+    + +  +   KD IA  E   L   P C E+P  
Sbjct: 837  DPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPV- 895

Query: 413  DSIKNDSARTEDDPTTDVKGPAMGAKSLCI 502
                N +  T D  +  V G   G + + +
Sbjct: 896  ----NPNFNTRDGQSLVVLGELAGLQKIIL 921


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 211 RENDAKTRRGRQRHYRITREDTRPD 285
           R+   + +R RQ   RIT++D  PD
Sbjct: 650 RQKQLEKKRRRQELERITQQDATPD 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,728
Number of Sequences: 5004
Number of extensions: 35025
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)