Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K14
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 110 7e-25
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 61 6e-10
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 31 0.70
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219... 30 1.2
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 30 1.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 30 1.2
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 29 1.6
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 29 2.1
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 28 5.0
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 28 5.0
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 28 5.0
05_03_0587 + 15859009-15859070,15860022-15860103,15860603-158607... 27 8.7
03_05_0227 + 22133847-22133951,22134648-22135047,22135452-221355... 27 8.7
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 110 bits (264), Expect = 7e-25
Identities = 71/192 (36%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Frame = +2
Query: 17 LIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKG----- 181
+++ CK V+ L GIRA+ D R+NYSPGWK++HWE+KGVP+RIEIGPKDMA
Sbjct: 330 IVNECKKTVETLEKAGIRADLDTRENYSPGWKYSHWEMKGVPLRIEIGPKDMANNQGTFV 389
Query: 182 ----------------EVVAV-------QRFAGEKMTLKRDAAVNDITALLERTHDQMFQ 292
E+V V +R G K + V + LL+ +F+
Sbjct: 390 IMHFPENCYIFTVREKELVVVVVMARVVRRDNGAKADIPTADLVEKVNGLLDEVQKNLFE 449
Query: 293 KSTKERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCEDSIKNDSARTEDDPTTDVKG 472
+ ++RDA L V W +FI L + L+ AP+C E E +K ART KG
Sbjct: 450 TAKQKRDACLKVVNTWDEFIVALNDKKLILAPWCDEEEVEKDVK---ART--------KG 498
Query: 473 PAMGAKSLCIPF 508
AK+LC PF
Sbjct: 499 DLGAAKTLCTPF 510
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 60.9 bits (141), Expect = 6e-10
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = +2
Query: 5 EGKNLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGE 184
E ++++ + + L GIR + D + +PGWKFN +E+KGVP+R+EIGP+D+
Sbjct: 362 EKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPIRLEIGPRDVTNKS 421
Query: 185 VVAVQR----FAGEKMTLKRDAA--VNDITALLERTHDQMFQKSTKERDAHLS 325
VV +R G++ + D + V+ I L + QK+ RD S
Sbjct: 422 VVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASLLQKAIAFRDRQTS 474
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 30.7 bits (66), Expect = 0.70
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 378 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 500
C RS YHAR + P L+++ L++ K +AP+ C+
Sbjct: 364 CMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAPKLCS 404
>06_01_0303 +
2194345-2194414,2195228-2195328,2195818-2196657,
2196743-2196889,2196985-2197365
Length = 512
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 378 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 500
C RS YHAR + P L+++ +++ K +AP+ C+
Sbjct: 306 CMVRSGYVYHARAELPSIMPNLESLAMKSFKETAFAPKLCS 346
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 378 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 500
C RS YHAR + P L+++ +++ K +AP+ C+
Sbjct: 355 CMVRSGYVYHARAELPSIMPNLESLAIKSRKETAFAPKLCS 395
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 227 KRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLE 364
+RD A D+ + L + + + ++ ++ +AHL E K+ I++L+
Sbjct: 343 ERDKAAEDLKSALHKVNAEAQEEIKRQAEAHLRQQREQKEVISKLQ 388
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 242 RPRLVLASFSRPQTFALRRL--RPSPYP*DRSRYGPEHPSTPND*ISSPVNS 93
RP + L FS F + R +PY +RS HPS+ +D SP+++
Sbjct: 137 RPSITLDEFSATDVFRIIDFGNRDAPYEANRSSSSLAHPSSESDEERSPIDT 188
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 227 LASFSRPQTFALRRLRPSPYP*DRSRYGPEHPSTPND*ISSPVNSCPCN 81
L + SRP A L P R R P P+D S+P +S P N
Sbjct: 16 LGALSRPSRVAPSPLAALAAPRRRRRRSPSPSPAPSDSDSNPASSAPAN 64
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 242 RPRLVLASFSRPQTFALRRLRPSPYP*DRSRYGPEHPSTP 123
RP + ++ PQT LR L P+ +R + PE STP
Sbjct: 169 RPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAPESSSTP 208
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 14 NLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVA 193
N + C L + GIRAE + + + E K VP+ +GPK++ +
Sbjct: 620 NELQYCNEVASELKSKGIRAEVCHGERLPK--LIRNAETKKVPLMAVVGPKEVQARTLTI 677
Query: 194 VQRFAGEKMTLKRD 235
R +GE T+ D
Sbjct: 678 RSRHSGEIGTMPVD 691
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 263 LERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCEDSI 421
L T D+ F KS K+ A KD R A+HLL PF ++ ED++
Sbjct: 257 LHNTKDKKFSKSFKQMIA----TCLMKDPSKRPTAQHLLELPFFKKVKFEDNV 305
>05_03_0587 +
15859009-15859070,15860022-15860103,15860603-15860785,
15861522-15861719,15861858-15862004,15862485-15862856
Length = 347
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 95 YSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGE 214
Y P K +HW+L G ++IE GP + G V+ F+G+
Sbjct: 129 YEPMVK-HHWDLSGSWIQIENGPDVIGAGSWVS-PSFSGD 166
>03_05_0227 +
22133847-22133951,22134648-22135047,22135452-22135561,
22135869-22135955
Length = 233
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 311 DAHLSHVTEWKDFIARLEARHLLF--APFCGEIPCEDSIKNDSARTEDDPTTDVKGPAMG 484
D SH TE + + F + GE DSI N A +D P+T VK
Sbjct: 79 DPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNSKAVKDDGPSTAVKDDGSS 138
Query: 485 AK 490
K
Sbjct: 139 VK 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,558
Number of Sequences: 37544
Number of extensions: 249484
Number of successful extensions: 653
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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