Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K14
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 151 4e-37
U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna syn... 81 5e-16
Z69384-2|CAD89746.1| 521|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z69384-1|CAA93416.1| 520|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 29 1.5
AC024771-10|AAK70664.1| 433|Caenorhabditis elegans Hypothetical... 28 4.5
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 5.9
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 27 5.9
U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 5.9
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 27 5.9
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 27 7.8
U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical pr... 27 7.8
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 27 7.8
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 151 bits (365), Expect = 4e-37
Identities = 72/165 (43%), Positives = 100/165 (60%)
Frame = +2
Query: 11 KNLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVV 190
++L D+ LVA G++AE D R+NY+ GWKFNHWELKGVP+R E+GP D+AK +V
Sbjct: 392 QSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVT 451
Query: 191 AVQRFAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEAR 370
AV R GEK L + + +LL+ H M+ K +RD+HL T ++F L+ +
Sbjct: 452 AVIRHNGEKKQLSLEGLSKTVKSLLDEIHTAMYNKVLAQRDSHLKSTTCIEEFKKLLDEK 511
Query: 371 HLLFAPFCGEIPCEDSIKNDSARTEDDPTTDVKGPAMGAKSLCIP 505
++ +PFCG CE+ IK S R D +G MGAK+LCIP
Sbjct: 512 CIILSPFCGRPDCEEEIKKASTR------EDGEGAQMGAKTLCIP 550
>U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform b protein.
Length = 454
Score = 81.0 bits (191), Expect = 5e-16
Identities = 32/58 (55%), Positives = 43/58 (74%)
Frame = +2
Query: 11 KNLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGE 184
++L D+ LVA G++AE D R+NY+ GWKFNHWELKGVP+R E+GP D+AK +
Sbjct: 392 QSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQ 449
>Z69384-2|CAD89746.1| 521|Caenorhabditis elegans Hypothetical
protein T11G6.1b protein.
Length = 521
Score = 37.5 bits (83), Expect = 0.006
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 11 KNLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVV 190
KNL+ K V ML + GI+ E + N +F + E + +P+ I IG +++ G V
Sbjct: 434 KNLVRDRKKLVKMLRSAGIKTEMALKANPKLLTQFQYAEERRIPLAIVIGEQELKDGVVK 493
Query: 191 AVQRFAGEKMTLKRD---AAVNDITALL 265
++ T+K D AV D A L
Sbjct: 494 LRNVVTRDEQTIKLDQLITAVRDTLAAL 521
>Z69384-1|CAA93416.1| 520|Caenorhabditis elegans Hypothetical
protein T11G6.1a protein.
Length = 520
Score = 37.5 bits (83), Expect = 0.006
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 11 KNLIDSCKAFVDMLVAGGIRAEGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVV 190
KNL+ K V ML + GI+ E + N +F + E + +P+ I IG +++ G V
Sbjct: 433 KNLVRDRKKLVKMLRSAGIKTEMALKANPKLLTQFQYAEERRIPLAIVIGEQELKDGVVK 492
Query: 191 AVQRFAGEKMTLKRD---AAVNDITALL 265
++ T+K D AV D A L
Sbjct: 493 LRNVVTRDEQTIKLDQLITAVRDTLAAL 520
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 178 LRHILR-TDLDTDRNTLQLPMIEFPAR*IVVPVIPLGPNTA 59
L+H++ T + T +T Q+ PA ++VPV+PL P T+
Sbjct: 322 LQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTS 362
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 178 LRHILR-TDLDTDRNTLQLPMIEFPAR*IVVPVIPLGPNTA 59
L+H++ T + T +T Q+ PA ++VPV+PL P T+
Sbjct: 322 LQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTS 362
>AC024771-10|AAK70664.1| 433|Caenorhabditis elegans Hypothetical
protein Y40B10A.9 protein.
Length = 433
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 305 ERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCED 415
ER L H+ W R +AR F P ++ C D
Sbjct: 314 ERGLSLLHLAIWNSLFTRNKARESQFRPTASQVFCPD 350
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 217 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 396
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 397 GN 402
+
Sbjct: 2650 NH 2651
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 217 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 396
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 397 GN 402
+
Sbjct: 2650 NH 2651
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 194 VQRFAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTE 337
V F G+K R+AA+N + A + DQM++ + + D S V E
Sbjct: 813 VAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEE 860
>U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical
protein R13A1.8 protein.
Length = 342
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 244 QRHYRITREDTRPDVSEVNKRTRCASIAC 330
+RHYR D P ++E N R CA I C
Sbjct: 259 ERHYR---PDITPHMTEENVRVFCAQIVC 284
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 217 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 396
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 397 GN 402
+
Sbjct: 2650 NH 2651
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 194 VQRFAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTE 337
V F G+K R+AA+N + A + DQM++ + + D S V E
Sbjct: 813 VAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEE 860
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 375 RCLASKRAMKSFHSVTCDRCASRSFVD 295
RCLA +RA VTCD+ R D
Sbjct: 817 RCLAEERACDEEQQVTCDQIRRRRMPD 843
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 375 RCLASKRAMKSFHSVTCDRCASRSFVD 295
RCLA +RA VTCD+ R D
Sbjct: 817 RCLAEERACDEEQQVTCDQIRRRRMPD 843
>U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical
protein F20B4.4 protein.
Length = 210
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 208 GRENDAKTRRGRQRHYRITREDTRPDVSEVNKRTR 312
GR+++ ++RRGR H R + ++ + +TR
Sbjct: 43 GRQSNRRSRRGRPHHLRSPAATIKGTITRIVNKTR 77
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 27.1 bits (57), Expect = 7.8
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = -2
Query: 420 ILSSHGISPQNGANRRCLA--SKRAMKSFHSVTCDRCAS----------RSFVDF*NIWS 277
IL+ HG PQN +CLA S+ + + +T +S + + + N +
Sbjct: 88 ILTIHGTRPQNEGEYQCLAEISRIRLTNRQLITTTMISSPLKIRRARFTKFDITYLNHAA 147
Query: 276 CVLSSNAVMSLTAASRFSVIFSPANLCTA 190
+ N V L A VI SPA++C A
Sbjct: 148 ITVRENEVARLPCAGMPDVIPSPASICFA 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,619
Number of Sequences: 27780
Number of extensions: 209199
Number of successful extensions: 627
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -