Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K12
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   1.9  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   4.3  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   4.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   7.6  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 373 CVVLSGRFFRFSWWG 329
           CVV +G    FSWWG
Sbjct: 750 CVVYTGGSSNFSWWG 764


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 50  TRPPEEVTSTEVRIQLKSPQKNWSEH 127
           TR P EVT  E     KS   +W +H
Sbjct: 273 TRNPSEVTKEEYASFYKSLTNDWEDH 298


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 131 YHVQTSFFGEILIGF*LPWKSPLRAVLFMCL 39
           YHV T   GE+++      K  LR ++F CL
Sbjct: 117 YHVDTLLDGELVLDIYPGGKKQLRYLVFDCL 147


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 383 VVRLRSFKRSL---LPLQLVGFPPPLSPSFRELSSLS 282
           V R  +FK +L    P+QLV  P P S S  EL ++S
Sbjct: 306 VERFGTFKSNLNGRTPVQLVRTPSPASLSSSELINIS 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,746
Number of Sequences: 5004
Number of extensions: 18111
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)