Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K12
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    27   5.0  
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    27   6.5  
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...    26   8.7  

>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 347 PLQLVGFPPPLSPSFRELSSLSPPP 273
           P+QLV  P PL+P+     +  PPP
Sbjct: 50  PIQLVVQPTPLTPAITPCEAPPPPP 74


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 395 EPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPPP 273
           EP     L+  K   LP      PPP  P+F++L  L P P
Sbjct: 321 EPEAFQELKELKEEPLPT-----PPPEEPAFQKLVLLEPIP 356


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 395 EPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPPP 273
           EP     L+  K   LP      PPP  P+F++L  L P P
Sbjct: 321 EPEAFQELKELKEEPLPT-----PPPEEPAFQKLVLLEPIP 356


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +1

Query: 262 HCR*GGGD---REDNSRKEGESGGG 327
           H + G GD   +ED  +KEG  GGG
Sbjct: 239 HLKNGSGDGEEKEDEEKKEGGEGGG 263


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +1

Query: 262 HCR*GGGD---REDNSRKEGESGGG 327
           H + G GD   +ED  +KEG  GGG
Sbjct: 239 HLKNGSGDGEEKEDEEKKEGGEGGG 263


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 274 GGGDREDNSRKEGESGGG 327
           GGG  +DN R E   GGG
Sbjct: 49  GGGGEDDNDRGERRGGGG 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,995,453
Number of Sequences: 27780
Number of extensions: 109145
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)